Rh6AG514900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004854
Physical Location & Seq
Reverse (-)
68504157 .. 68504384
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG514900.1

Sequence Viewer

Length: 228 bp
ATGGAGAAGGAAAGAAAGAACAGATCAGGTGGGAGAATGGTTTCAAACTCGAAAGCTAAGATTCAGGAGGGCATTCAGGGCAGACGTGGATCTGGGCCCGTAGTTGGGTTATCGGACCAGAAGACTTTTGGGAAGAAATTGGGGGCCCGTGGGGTTTCAAAAAAGGCCTTTAAGGTTGGGAGGCACAGTGACAACGGTGCTCAGGTCATAGAAGATGAGCTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.11

Weight (kDa)

10.34

Isoelectric Point (pI)

25.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 104, 105
AgsI TTSAA 2 cut(s) 45, 159
AjiI CACGTC 1 cut(s) 86
AluBI AGCT 2 cut(s) 56, 220
AluI AGCT 2 cut(s) 56, 220
Alw21I GWGCWC 2 cut(s) 202, 222
AlwI GGATC 1 cut(s) 97
AoxI GGCC 3 cut(s) 95, 144, 165
ApaI GGGCCC 2 cut(s) 99, 148
Asp700I GAANNNNTTC 1 cut(s) 40
AspS9I GGNCC 5 cut(s) 95, 96, 115, 144, 145
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 2 cut(s) 99, 148
BanII GRGCYC 3 cut(s) 99, 148, 222
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 2 cut(s) 202, 222
Bme18I GGWCC 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 5 cut(s) 95, 96, 115, 144, 145
BmiI GGNNCC 3 cut(s) 97, 145, 146
BpiI GAAGAC 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 105
BseDI CCNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 104, 105
BseMII CTCAG 1 cut(s) 215
BseSI GKGCMC 2 cut(s) 99, 148
BshFI GGCC 3 cut(s) 97, 146, 167
BsiHKAI GWGCWC 2 cut(s) 202, 222
BslI CCNNNNNNNGG 2 cut(s) 104, 105
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 3 cut(s) 97, 146, 167
Bsp120I GGGCCC 2 cut(s) 95, 144
Bsp1286I GDGCHC 4 cut(s) 99, 148, 202, 222
Bsp143I GATC 2 cut(s) 23, 89
BspANI GGCC 3 cut(s) 97, 146, 167
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 97, 145, 146
BspPI GGATC 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 2 cut(s) 23, 89
Bst4CI ACNGT 2 cut(s) 188, 197
BstDEI CTNAG 2 cut(s) 57, 201
BstDSI CCRYGG 1 cut(s) 148
BstKTI GATC 2 cut(s) 26, 92
BstMBI GATC 2 cut(s) 23, 89
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSLI GKGCMC 2 cut(s) 99, 148
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 3 cut(s) 97, 146, 167
BtgI CCRYGG 1 cut(s) 148
BtrI CACGTC 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 193
Cfr13I GGNCC 5 cut(s) 95, 96, 115, 144, 145
CviJI RGCY 5 cut(s) 56, 97, 146, 167, 220
CviKI_1 RGCY 5 cut(s) 56, 97, 146, 167, 220
DdeI CTNAG 2 cut(s) 57, 201
DpnI GATC 2 cut(s) 25, 91
DpnII GATC 2 cut(s) 23, 89
Ecl136II GAGCTC 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 167
Eco24I GRGCYC 3 cut(s) 99, 148, 222
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 144
EcoT38I GRGCYC 3 cut(s) 99, 148, 222
FaiI YATR 1 cut(s) 209
FriOI GRGCYC 3 cut(s) 99, 148, 222
HaeIII GGCC 3 cut(s) 97, 146, 167
HinfI GANTC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 188, 197
HpyCH4IV ACGT 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 57, 201
HpySE526I ACGT 1 cut(s) 85
Kzo9I GATC 2 cut(s) 23, 89
LpnPI CCDG 6 cut(s) 12, 50, 62, 78, 131, 188
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 25, 91
MboI GATC 2 cut(s) 23, 89
MboII GAAGA 3 cut(s) 133, 145, 224
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 4 cut(s) 99, 148, 202, 222
MluCI AATT 1 cut(s) 137
MnlI CCTC 2 cut(s) 61, 174
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 2 cut(s) 23, 89
NlaIV GGNNCC 3 cut(s) 97, 145, 146
NmuCI GTSAC 1 cut(s) 188
PceI AGGCCT 1 cut(s) 167
PctI GAATGC 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 97, 145, 146
PspOMI GGGCCC 2 cut(s) 95, 144
PspPI GGNCC 5 cut(s) 95, 96, 115, 144, 145
PsuI RGATCY 1 cut(s) 89
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 2 cut(s) 23, 89
Sau96I GGNCC 5 cut(s) 95, 96, 115, 144, 145
SduI GDGCHC 4 cut(s) 99, 148, 202, 222
SetI ASST 6 cut(s) 31, 58, 88, 177, 207, 222
SinI GGWCC 1 cut(s) 115
Sse9I AATT 1 cut(s) 137
SseBI AGGCCT 1 cut(s) 167
SstI GAGCTC 1 cut(s) 222
StuI AGGCCT 1 cut(s) 167
TaaI ACNGT 2 cut(s) 188, 197
TaiI ACGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 50, 222
TasI AATT 1 cut(s) 137
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.