Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Reverse (-)

40417324 .. 40417782

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG238100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGTCACCCGATCAATTCCATTGCTTCGTATCTTGAGAGAGCACTGAAATCAAATTCCAGGTCATATGCGACACAAAACAAAAAATTTAACTTGGTACTTGATCTTGATCACACGCTACTGCATTCCACTTCACTCAAAAATTTGACGCCCCTAGAAGAATACCTGATCACCAAACCAGATGATCCATCTCTGCAAGGTGATGTTTTCATGAATTCCATCATAATAACCAAGCTGAGGCCATTCGCGAGGACATTTCTAAAGGAAGCCGGTCAAATGTTTGAGATGCACATATACACAATGGGCTGTCGAGCTTACGCGATGCAAATGACTGAGCTGCTTGACCCCGGAAAAGAGTACTTCACCTCCACCTCCAGTTCTAAAATAACATCGCGTGATGATCATAGCTCCCCAGGACAAAAGAAGTGTAAATCTTGTGCGCGGTTGCCAAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

152

Amino Acids

17.29

Weight (kDa)

9.13

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	31 - 124	2.2e-16	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	248, 320, 394, 442
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	5 cut(s)	55, 86, 142, 214, 452
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	2 cut(s)	99, 359
AfiI	CCNNNNNNNGG	1 cut(s)	237
AjnI	CCWGG	2 cut(s)	59, 412
AluBI	AGCT	4 cut(s)	235, 314, 337, 408
AluI	AGCT	4 cut(s)	235, 314, 337, 408
Alw21I	GWGCWC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	5 cut(s)	55, 86, 142, 214, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	1 cut(s)	442
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	3 cut(s)	163, 212, 355
Bbv12I	GWGCWC	1 cut(s)	46
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	2 cut(s)	196, 227
BciT130I	CCWGG	2 cut(s)	61, 414
BclI	TGATCA	3 cut(s)	109, 168, 400
BcnI	CCSGG	1 cut(s)	348
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	3 cut(s)	61, 348, 414
BmrFI	CCNGG	3 cut(s)	61, 348, 414
BmsI	GCATC	2 cut(s)	276, 312
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	346, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	61, 414
BseDI	CCNNGG	2 cut(s)	346, 412
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	227, 324
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	324
Bsh1236I	CGCG	4 cut(s)	248, 320, 394, 442
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	270, 348
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	6 cut(s)	12, 103, 109, 168, 184, 400
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	228, 325
BspFNI	CGCG	4 cut(s)	248, 320, 394, 442
BspHI	TCATGA	1 cut(s)	210
BspPI	GGATC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	346, 412
BssMI	GATC	6 cut(s)	12, 103, 109, 168, 184, 400
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	61, 414
BstACI	GRCGYC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	236, 333
BstFNI	CGCG	4 cut(s)	248, 320, 394, 442
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	6 cut(s)	15, 106, 112, 171, 187, 403
BstMBI	GATC	6 cut(s)	12, 103, 109, 168, 184, 400
BstNI	CCWGG	2 cut(s)	61, 414
BstSCI	CCNGG	3 cut(s)	59, 346, 412
BstUI	CGCG	4 cut(s)	248, 320, 394, 442
BstV1I	GCAGC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	241
BtgZI	GCGATG	2 cut(s)	335, 375
BtsIMutI	CAGTG	1 cut(s)	44
BtuMI	TCGCGA	1 cut(s)	248
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	269
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	98, 358
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	235, 241, 269, 306, 314, 337, 408
CviKI_1	RGCY	7 cut(s)	235, 241, 269, 306, 314, 337, 408
CviQI	GTAC	2 cut(s)	98, 358
DdeI	CTNAG	2 cut(s)	236, 333
DpnI	GATC	6 cut(s)	14, 105, 111, 170, 186, 402
DpnII	GATC	6 cut(s)	12, 103, 109, 168, 184, 400
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	59, 412
FaeI	CATG	1 cut(s)	214
FaiI	YATR	7 cut(s)	67, 69, 212, 224, 293, 295, 405
FatI	CATG	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	3 cut(s)	109, 168, 400
Fnu4HI	GCNGC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	270, 348
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	270, 348
HphI	GGTGA	3 cut(s)	163, 212, 355
Hpy188III	TCNNGA	4 cut(s)	35, 107, 211, 247
HpyCH4V	TGCA	4 cut(s)	124, 196, 289, 325
HpyF3I	CTNAG	2 cut(s)	236, 333
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	440
Ksp22I	TGATCA	3 cut(s)	109, 168, 400
Kzo9I	GATC	6 cut(s)	12, 103, 109, 168, 184, 400
LmnI	GCTCC	1 cut(s)	413
LpnPI	CCDG	9 cut(s)	46, 73, 179, 192, 283, 361, 388, 399, 426
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	276, 312
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	6 cut(s)	14, 105, 111, 170, 186, 402
MboI	GATC	6 cut(s)	12, 103, 109, 168, 184, 400
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	6 cut(s)	16, 55, 86, 142, 214, 452
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	231, 243, 376, 382
MseI	TTAA	1 cut(s)	90
MspI	CCGG	2 cut(s)	270, 348
MspR9I	CCNGG	3 cut(s)	61, 348, 414
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	2 cut(s)	61, 414
MvnI	CGCG	4 cut(s)	248, 320, 394, 442
NciI	CCSGG	1 cut(s)	348
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	6 cut(s)	12, 103, 109, 168, 184, 400
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	5
NruI	TCGCGA	1 cut(s)	248
PagI	TCATGA	1 cut(s)	210
PctI	GAATGC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	59, 412
PspGI	CCWGG	2 cut(s)	59, 412
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	2 cut(s)	99, 359
RsaNI	GTAC	2 cut(s)	98, 358
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	6 cut(s)	12, 103, 109, 168, 184, 400
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	61, 348, 414
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	65, 168, 202, 237, 316, 339, 368, 374, 410
SfaNI	GCATC	2 cut(s)	276, 312
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	6 cut(s)	16, 55, 86, 142, 214, 452
SsiI	CCGC	1 cut(s)	442
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	59, 346, 412
TaqI	TCGA	1 cut(s)	310
TasI	AATT	6 cut(s)	16, 55, 86, 142, 214, 452
TatI	WGTACW	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	199, 227
TspRI	CASTG	1 cut(s)	51
XapI	RAATTY	5 cut(s)	55, 86, 142, 214, 452
XspI	CTAG	1 cut(s)	155
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.