Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Forward (+)

19407355 .. 19409432

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007651

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAATTCGCTGCTAAAATAGGAGATGTTGAATCCTTGTGGGAAATTGACAAGTTGAGATCTGAGTCTCAGAAGCAGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGAGAGCACTGAAATCAAATTCCAAGTCATATGCGACACAAAACAAAAAACTTCACTTGGTACTTGATCTTGATCACACGCTACTGCATTCCACTTCACTCAAAAATTTGACGCCCCTAGAAGAATACTTGATCAACAAACCAGATGATCCATCTATGCACGGTGATGTTTTCATGAATTCCATCATAATAACCAAGTTGAGGCCATTCGTGAGGACATTTCTAAAGGAAGCCGGTCAAATGTTTGAGATGCACATATACACAATGGGCAGTCGAGCTTACGCACTGCGAATGGCTGAGCTGCTTGACCCTGAAAAAGAGTACTTCTTCACCTCCACCTCCAGTTCTAAAATAACATCGCGTGATGATCACAGCTCCTCAGGACAAAAGAAGTGTCTAAATCTTGTGCGCGGCTGCCAAAATTCTAATGTCTTGATCCTTGACGATATAAGAAACGCATGGACAAAGAAAAATCAGGACAATTTGATAGTAATGCAAAAGTACTATTTCTTCAAATCCACTTGTCATCTGAATAATGTTACCGGTCAATCTCATGCCGAGTTAAGGACCGATGAAAGCGGTTATCTTGAACACATTCTTCGGTGTCTTAAGCGAATCCATGATATCTGGACCAACAATCCTATCGACATTGATGTAAGGCAGGTGTTAAAAATTCTTCGGAAGCGGGTGTTGAAGGGGTGTGTGATTGTTTTTAACTCTCATAACACTAATATGTGGAAAATGGCAGAGGAGTTGGGAGCAACTTGTTCATCACGAGCGGATGCATCATCTGTCACGCATGTGGTTGTAATAAATGCTCGAACGAAGAATGATCTTCTGGCACTGAAGAACAAGTTTTTGGTCTGCCCACAGTGGATTGAAGCTGCGAGTTACTTGTGGGAAAAACAACCTGAACACAAGTTCTCCATCTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

349

Amino Acids

40.02

Weight (kDa)

9.04

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	55 - 208	2.3e-22	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	760
Acc36I	ACCTGC	1 cut(s)	760
AccBSI	CCGCTC	1 cut(s)	887
AccII	CGCG	2 cut(s)	469, 519
AciI	CCGC	4 cut(s)	519, 687, 793, 887
AclWI	GGATC	2 cut(s)	251, 538
AcsI	RAATTY	6 cut(s)	5, 127, 214, 286, 529, 780
AcuI	CTGAAG	1 cut(s)	974
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	3 cut(s)	171, 431, 611
AfiI	CCNNNNNNNGG	2 cut(s)	309, 672
AflII	CTTAAG	1 cut(s)	716
AgeI	ACCGGT	1 cut(s)	650
AgsI	TTSAA	6 cut(s)	32, 622, 698, 802, 989, 1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	950, 982
AleI	CACNNNNGTG	2 cut(s)	86, 908
AluBI	AGCT	4 cut(s)	386, 409, 483, 992
AluI	AGCT	4 cut(s)	386, 409, 483, 992
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	251, 538
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	5 cut(s)	11, 76, 409, 522, 992
ApoI	RAATTY	6 cut(s)	5, 127, 214, 286, 529, 780
ArsI	GACNNNNNNTTYG	4 cut(s)	119, 151, 487, 519
AsiGI	ACCGGT	1 cut(s)	650
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	675, 738
AsuHPI	GGTGA	2 cut(s)	284, 430
AvaII	GGWCC	2 cut(s)	675, 738
AxyI	CCTNAGG	1 cut(s)	487
BarI	GAAGNNNNNNTAC	2 cut(s)	602, 634
BauI	CACGAG	1 cut(s)	882
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	88, 396, 509, 979
BccI	CCATC	3 cut(s)	268, 299, 1043
BclI	TGATCA	3 cut(s)	181, 240, 475
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	760
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	6 cut(s)	12, 77, 410, 520, 523, 993
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	6 cut(s)	13, 78, 411, 521, 524, 994
BmcAI	AGTACT	2 cut(s)	431, 611
Bme18I	GGWCC	2 cut(s)	675, 738
BmgT120I	GGNCC	2 cut(s)	675, 738
BmsI	GCATC	3 cut(s)	348, 880, 902
BpmI	CTGGAG	1 cut(s)	433
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	1016, 1046
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 672
Bse118I	RCCGGY	2 cut(s)	341, 650
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	180
BseGI	GGATG	1 cut(s)	895
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	309, 672
BseMII	CTCAG	4 cut(s)	54, 83, 396, 501
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	475, 872
BseXI	GCAGC	4 cut(s)	88, 396, 509, 979
Bsh1236I	CGCG	2 cut(s)	469, 519
BshFI	GGCC	1 cut(s)	313
BshTI	ACCGGT	1 cut(s)	650
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	342, 651
BslI	CCNNNNNNNGG	2 cut(s)	309, 672
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	8 cut(s)	59, 175, 181, 240, 256, 475, 543, 940
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	4 cut(s)	519, 687, 793, 887
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	4 cut(s)	55, 82, 397, 500
BspFNI	CGCG	2 cut(s)	469, 519
BspHI	TCATGA	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	2 cut(s)	251, 538
BspTI	CTTAAG	1 cut(s)	716
BsrBI	CCGCTC	1 cut(s)	887
BsrFI	RCCGGY	2 cut(s)	341, 650
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	2 cut(s)	341, 650
BssMI	GATC	8 cut(s)	59, 175, 181, 240, 256, 475, 543, 940
BssNI	GRCGYC	1 cut(s)	221
BssSI	CACGAG	1 cut(s)	882
Bst2BI	CACGAG	1 cut(s)	882
Bst4CI	ACNGT	3 cut(s)	85, 272, 981
BstACI	GRCGYC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	716
BstDEI	CTNAG	4 cut(s)	63, 69, 405, 487
BstF5I	GGATG	1 cut(s)	895
BstFNI	CGCG	2 cut(s)	469, 519
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	8 cut(s)	62, 178, 184, 243, 259, 478, 546, 943
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	8 cut(s)	59, 175, 181, 240, 256, 475, 543, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	911
BstUI	CGCG	2 cut(s)	469, 519
BstV1I	GCAGC	4 cut(s)	88, 396, 509, 979
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
Bsu36I	CCTNAGG	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	895
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	5 cut(s)	81, 116, 392, 950, 986
BveI	ACCTGC	1 cut(s)	760
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	519
Cfr10I	RCCGGY	2 cut(s)	341, 650
Cfr13I	GGNCC	2 cut(s)	675, 738
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	170, 430, 610
CspAI	ACCGGT	1 cut(s)	650
CviAII	CATG	6 cut(s)	102, 283, 567, 662, 728, 908
CviJI	RGCY	8 cut(s)	313, 341, 386, 404, 409, 483, 522, 992
CviKI_1	RGCY	8 cut(s)	313, 341, 386, 404, 409, 483, 522, 992
CviQI	GTAC	3 cut(s)	170, 430, 610
DdeI	CTNAG	4 cut(s)	63, 69, 405, 487
DpnI	GATC	8 cut(s)	61, 177, 183, 242, 258, 477, 545, 942
DpnII	GATC	8 cut(s)	59, 175, 181, 240, 256, 475, 543, 940
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	2 cut(s)	675, 738
Eco57I	CTGAAG	1 cut(s)	974
Eco81I	CCTNAGG	1 cut(s)	487
EcoRI	GAATTC	2 cut(s)	5, 286
EcoRV	GATATC	1 cut(s)	733
EcoT22I	ATGCAT	1 cut(s)	895
FaeI	CATG	6 cut(s)	105, 286, 570, 665, 731, 911
FatI	CATG	6 cut(s)	101, 282, 566, 661, 727, 907
FauI	CCCGC	1 cut(s)	786
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	3 cut(s)	181, 240, 475
Fnu4HI	GCNGC	6 cut(s)	12, 77, 410, 520, 523, 993
FokI	GGATG	1 cut(s)	902
Fsp4HI	GCNGC	6 cut(s)	12, 77, 410, 520, 523, 993
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	6 cut(s)	12, 77, 410, 520, 523, 993
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	2 cut(s)	342, 651
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	6 cut(s)	105, 286, 570, 665, 731, 911
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	32, 65, 723
HpaII	CCGG	2 cut(s)	342, 651
HphI	GGTGA	2 cut(s)	284, 430
Hpy188I	TCNGA	4 cut(s)	64, 72, 639, 789
Hpy188III	TCNNGA	9 cut(s)	179, 283, 319, 489, 541, 584, 695, 736, 882
HpyAV	CCTTC	1 cut(s)	796
HpyCH4III	ACNGT	3 cut(s)	85, 272, 981
HpyCH4V	TGCA	6 cut(s)	107, 196, 268, 361, 604, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	4 cut(s)	63, 69, 405, 487
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	6 cut(s)	105, 286, 570, 665, 731, 911
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	3 cut(s)	181, 240, 475
Kzo9I	GATC	8 cut(s)	59, 175, 181, 240, 256, 475, 543, 940
LmnI	GCTCC	2 cut(s)	488, 866
Lsp1109I	GCAGC	4 cut(s)	88, 396, 509, 979
LweI	GCATC	3 cut(s)	348, 880, 902
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	646, 901, 998
MalI	GATC	8 cut(s)	61, 177, 183, 242, 258, 477, 545, 942
MbiI	CCGCTC	1 cut(s)	887
MboI	GATC	8 cut(s)	59, 175, 181, 240, 256, 475, 543, 940
MboII	GAAGA	9 cut(s)	242, 427, 610, 698, 776, 935, 946, 967, 1030
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	9 cut(s)	5, 45, 127, 214, 286, 529, 589, 780, 1042
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	303, 315, 451, 457, 496, 850
Mph1103I	ATGCAT	1 cut(s)	895
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	5 cut(s)	671, 717, 776, 822, 1045
MslI	CAYNNNNRTG	4 cut(s)	86, 273, 839, 908
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	2 cut(s)	342, 651
Mva1269I	GAATGC	1 cut(s)	196
MvnI	CGCG	2 cut(s)	469, 519
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	8 cut(s)	59, 175, 181, 240, 256, 475, 543, 940
NlaIII	CATG	6 cut(s)	105, 286, 570, 665, 731, 911
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	1 cut(s)	901
NsiI	ATGCAT	1 cut(s)	895
NspI	RCATGY	1 cut(s)	911
OliI	CACNNNNGTG	2 cut(s)	86, 908
PagI	TCATGA	1 cut(s)	282
PaqCI	CACCTGC	1 cut(s)	760
PctI	GAATGC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	2 cut(s)	32, 723
PinAI	ACCGGT	1 cut(s)	650
PkrI	GCNGC	6 cut(s)	13, 78, 411, 521, 524, 994
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspPI	GGNCC	2 cut(s)	675, 738
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	3 cut(s)	171, 431, 611
RsaNI	GTAC	3 cut(s)	170, 430, 610
RseI	CAYNNNNRTG	4 cut(s)	86, 273, 839, 908
SaqAI	TTAA	5 cut(s)	671, 717, 776, 822, 1045
SatI	GCNGC	6 cut(s)	12, 77, 410, 520, 523, 993
Sau3AI	GATC	8 cut(s)	59, 175, 181, 240, 256, 475, 543, 940
Sau96I	GGNCC	2 cut(s)	675, 738
ScaI	AGTACT	2 cut(s)	431, 611
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	8 cut(s)	388, 411, 443, 449, 485, 774, 994, 1021
SfaNI	GCATC	3 cut(s)	348, 880, 902
SinI	GGWCC	2 cut(s)	675, 738
SmiMI	CAYNNNNRTG	4 cut(s)	86, 273, 839, 908
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	9 cut(s)	5, 45, 127, 214, 286, 529, 589, 780, 1042
SsiI	CCGC	4 cut(s)	519, 687, 793, 887
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	3 cut(s)	85, 272, 981
TaqI	TCGA	3 cut(s)	382, 753, 928
TaqII	GACCGA	1 cut(s)	692
TasI	AATT	9 cut(s)	5, 45, 127, 214, 286, 529, 589, 780, 1042
TatI	WGTACW	2 cut(s)	429, 609
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	2 cut(s)	32, 723
Tru1I	TTAA	5 cut(s)	671, 717, 776, 822, 1045
Tru9I	TTAA	5 cut(s)	671, 717, 776, 822, 1045
TscAI	CASTG	5 cut(s)	88, 123, 399, 957, 986
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	5 cut(s)	11, 76, 409, 522, 992
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	5 cut(s)	90, 271, 299, 696, 867
TspRI	CASTG	5 cut(s)	88, 123, 399, 957, 986
Vha464I	CTTAAG	1 cut(s)	716
VpaK11BI	GGWCC	2 cut(s)	675, 738
XapI	RAATTY	6 cut(s)	5, 127, 214, 286, 529, 780
XceI	RCATGY	1 cut(s)	911
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	1 cut(s)	227
ZrmI	AGTACT	2 cut(s)	431, 611
Zsp2I	ATGCAT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.