Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Forward (+)

13053064 .. 13053477

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG087100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGGACGGTGGATAAGGAAGGTGTAGCTGGGCCATTTACATTGGGCCATGCGATTAATGAGGTGGAACACTCATGTGATTTGAAGGATAATGGTGGGGCTAAGTCTGTGCCCCATAATAGTGGAGAAAAAGGCCCCTGTAAGAAGTTGCACGTGCATGATGGGAGTTTGCATGGTGGTCCACTAATTAGGGACCAATTAAAGGATGCTTTGTCATTGGACTCTCATAGGCCCAATGGGAAGGAAGCCATGCAACGTAGTGGTAAGGGAAGGAAGGGATTTCCAGTGGGAGGTCGTCGTAAGAAGGGATCTAATGGTGGTGTGGTCGTTTCAGAATCTGCTAAATCGAGCCCTGGGCGTGCTCTGAATTGTCCTTCCGTGATGGGTCCGGGTTTGACCCATCACGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.26

Weight (kDa)

9.55

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	316
AcvI	CACGTG	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	202, 290
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	352
AleI	CACNNNNGTG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	4 cut(s)	32, 46, 133, 230
AseI	ATTAAT	1 cut(s)	57
AspS9I	GGNCC	7 cut(s)	32, 46, 134, 179, 193, 231, 386
AsuC2I	CCSGG	1 cut(s)	390
AvaII	GGWCC	3 cut(s)	179, 193, 386
BaeGI	GKGCMC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	364
BccI	CCATC	3 cut(s)	155, 376, 408
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	354, 390
Bme18I	GGWCC	3 cut(s)	179, 193, 386
BmgT120I	GGNCC	7 cut(s)	32, 46, 134, 179, 193, 231, 386
BmiI	GGNNCC	3 cut(s)	136, 194, 387
BmrFI	CCNGG	2 cut(s)	354, 390
BmsI	GCATC	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	352, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 290
Bse1I	ACTGG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	352, 353
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	202, 290
BseNI	ACTGG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	29
BshFI	GGCC	4 cut(s)	34, 48, 135, 232
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	2 cut(s)	19, 206
BslI	CCNNNNNNNGG	2 cut(s)	202, 290
BsmFI	GGGAC	2 cut(s)	19, 206
BsnI	GGCC	4 cut(s)	34, 48, 135, 232
Bsp1286I	GDGCHC	3 cut(s)	114, 353, 364
Bsp143I	GATC	1 cut(s)	308
BspANI	GGCC	4 cut(s)	34, 48, 135, 232
BspLI	GGNNCC	3 cut(s)	136, 194, 387
BspPI	GGATC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	352, 353
BssMI	GATC	1 cut(s)	308
BssSI	CACGAG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	352, 388
BstSLI	GKGCMC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	308
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	4 cut(s)	34, 48, 135, 232
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	338
Cfr13I	GGNCC	7 cut(s)	32, 46, 134, 179, 193, 231, 386
CviAII	CATG	5 cut(s)	50, 75, 158, 173, 250
CviJI	RGCY	8 cut(s)	29, 34, 48, 101, 135, 232, 248, 351
CviKI_1	RGCY	8 cut(s)	29, 34, 48, 101, 135, 232, 248, 351
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	3 cut(s)	179, 193, 386
Eco72I	CACGTG	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	5 cut(s)	53, 78, 161, 176, 253
FaiI	YATR	7 cut(s)	51, 76, 117, 159, 174, 228, 251
FaqI	GGGAC	2 cut(s)	19, 206
FatI	CATG	5 cut(s)	49, 74, 157, 172, 249
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	353
GsaI	CCCAGC	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	34, 48, 135, 232
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	5 cut(s)	53, 78, 161, 176, 253
HinfI	GANTC	2 cut(s)	221, 335
HpaII	CCGG	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	334, 366
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	7 cut(s)	14, 79, 235, 264, 268, 298, 384
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	153, 256
HpyCH4V	TGCA	4 cut(s)	151, 157, 172, 253
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	2 cut(s)	153, 256
Hsp92II	CATG	5 cut(s)	53, 78, 161, 176, 253
Kzo9I	GATC	1 cut(s)	308
LpnPI	CCDG	6 cut(s)	15, 151, 297, 339, 366, 402
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	2 cut(s)	153, 256
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	3 cut(s)	114, 353, 364
MluCI	AATT	3 cut(s)	186, 197, 367
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	2 cut(s)	55, 284
MseI	TTAA	2 cut(s)	57, 200
MslI	CAYNNNNRTG	3 cut(s)	75, 120, 156
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	2 cut(s)	354, 390
MvaI	CCWGG	1 cut(s)	354
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	5 cut(s)	53, 78, 161, 176, 253
NlaIV	GGNNCC	3 cut(s)	136, 194, 387
OliI	CACNNNNGTG	1 cut(s)	75
PasI	CCCWGGG	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	215
PmaCI	CACGTG	1 cut(s)	154
PmlI	CACGTG	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	215
Ppu21I	YACGTR	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	352
PspCI	CACGTG	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	3 cut(s)	136, 194, 387
PspPI	GGNCC	7 cut(s)	32, 46, 134, 179, 193, 231, 386
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	308
RseI	CAYNNNNRTG	3 cut(s)	75, 120, 156
SaqAI	TTAA	2 cut(s)	57, 200
Sau3AI	GATC	1 cut(s)	308
Sau96I	GGNCC	7 cut(s)	32, 46, 134, 179, 193, 231, 386
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	354, 390
SduI	GDGCHC	3 cut(s)	114, 353, 364
SetI	ASST	6 cut(s)	25, 31, 66, 156, 259, 295
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	3 cut(s)	179, 193, 386
SmiMI	CAYNNNNRTG	3 cut(s)	75, 120, 156
Sse9I	AATT	3 cut(s)	186, 197, 367
StyD4I	CCNGG	2 cut(s)	352, 388
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	2 cut(s)	156, 259
TaqI	TCGA	1 cut(s)	347
TasI	AATT	3 cut(s)	186, 197, 367
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	57, 200
Tru9I	TTAA	2 cut(s)	57, 200
TscAI	CASTG	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	3 cut(s)	179, 193, 386
VspI	ATTAAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.