Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Reverse (-)

47562877 .. 47563605

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAATTCCATCATAATAACCAAGCTGAGGCCATTCGTGAGGACATTTCTAAAGGAAGCCGGTCAAATGTTTGAGATGCACATATACACAATGGGCTGTCGAGCTTACGCGATGCAAATGGCTGAGCTGCTTGACCCCGGAAAAGAGTACTTCTTCACCTCCACCTCCAATTCTAAAATAACATCGCGTGATGATCATAGCTCCCCAGGACAAAAGAAGTGTCTAAATCTTGTGCGCGGCTGCCAAAATTCTAATGTCTTGATCCTCGACGATATAAGAAACGCATGGACAAAGAAAAATCAGGACAATTTGATAGTAATGCAAAAGTACTATTTCTTCAAATCCACTTGTCATCTCAATAATGTTACCGGTCAATCTCATGCCGAGTTAAGGACCGATGAAAGCGGTTATCTTGAACACATTCTTCGGTGCCTCAAGCGAATCCATGATATCTGGACCAACAATCCTATCGACATTGATGTAAGGCAGGTGTTAAAAATTCTTCAGAAGCGGGTGTTGAAGGGGTATGTGATTGTTTTTAACTCTCATAACACTAATCTGTGGAAAATGGCAGAGGAGTTGGGAGCAACTTGTTCATCACGAGCGGATGCATCATCAGTCACGGATGTGGTTGCAATAAATGCTCGAACGAAGAATGATCTTCTGGCACTGAAGAACAAGTTTTTGGTCTGCCCACAGTGGATTGAAGCTGCGATTATTGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

242

Amino Acids

27.79

Weight (kDa)

9.23

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	7 - 115	5e-16	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	478
Acc36I	ACCTGC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	429
AccBSI	CCGCTC	1 cut(s)	605
AccII	CGCG	3 cut(s)	110, 187, 237
AciI	CCGC	4 cut(s)	237, 405, 511, 605
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	3 cut(s)	4, 247, 498
AcuI	CTGAAG	2 cut(s)	488, 692
AfaI	GTAC	2 cut(s)	149, 329
AfiI	CCNNNNNNNGG	2 cut(s)	27, 390
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	340, 416, 520, 707
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AleI	CACNNNNGTG	1 cut(s)	626
AluBI	AGCT	5 cut(s)	25, 104, 127, 201, 710
AluI	AGCT	5 cut(s)	25, 104, 127, 201, 710
AlwI	GGATC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	127, 240, 710
ApoI	RAATTY	3 cut(s)	4, 247, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AsiGI	ACCGGT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	393, 456
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	393, 456
BanI	GGYRCC	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BauI	CACGAG	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	114, 227, 697
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	207
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	478
BisI	GCNGC	4 cut(s)	128, 238, 241, 711
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	4 cut(s)	129, 239, 242, 712
BmcAI	AGTACT	2 cut(s)	149, 329
Bme1390I	CCNGG	2 cut(s)	138, 207
Bme18I	GGWCC	2 cut(s)	393, 456
BmgT120I	GGNCC	2 cut(s)	393, 456
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	2 cut(s)	138, 207
BmsI	GCATC	4 cut(s)	66, 102, 598, 620
Bpu10I	CCTNAGC	1 cut(s)	26
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	136, 205
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 390
Bse118I	RCCGGY	2 cut(s)	59, 368
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	136, 205
BseGI	GGATG	2 cut(s)	613, 631
BseLI	CCNNNNNNNGG	2 cut(s)	27, 390
BseMII	CTCAG	2 cut(s)	17, 114
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	3 cut(s)	114, 227, 697
Bsh1236I	CGCG	3 cut(s)	110, 187, 237
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	429
BshTI	ACCGGT	1 cut(s)	368
BsiSI	CCGG	3 cut(s)	60, 138, 369
BslI	CCNNNNNNNGG	2 cut(s)	27, 390
BsnI	GGCC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	193, 261, 658
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	4 cut(s)	237, 405, 511, 605
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	18, 115
BspFNI	CGCG	3 cut(s)	110, 187, 237
BspLI	GGNNCC	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	429
BsrBI	CCGCTC	1 cut(s)	605
BsrFI	RCCGGY	2 cut(s)	59, 368
BssAI	RCCGGY	2 cut(s)	59, 368
BssECI	CCNNGG	2 cut(s)	136, 205
BssMI	GATC	3 cut(s)	193, 261, 658
BssSI	CACGAG	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	699
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstDEI	CTNAG	2 cut(s)	26, 123
BstF5I	GGATG	2 cut(s)	613, 631
BstFNI	CGCG	3 cut(s)	110, 187, 237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	3 cut(s)	196, 264, 661
BstMBI	GATC	3 cut(s)	193, 261, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	136, 205
BstUI	CGCG	3 cut(s)	110, 187, 237
BstV1I	GCAGC	3 cut(s)	114, 227, 697
BsuRI	GGCC	1 cut(s)	31
BtgZI	GCGATG	2 cut(s)	125, 168
BtsCI	GGATG	2 cut(s)	613, 631
BtsIMutI	CAGTG	2 cut(s)	668, 704
BveI	ACCTGC	1 cut(s)	478
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	59, 368
Cfr13I	GGNCC	2 cut(s)	393, 456
Csp6I	GTAC	2 cut(s)	148, 328
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	3 cut(s)	285, 380, 446
CviQI	GTAC	2 cut(s)	148, 328
DdeI	CTNAG	2 cut(s)	26, 123
DpnI	GATC	3 cut(s)	195, 263, 660
DpnII	GATC	3 cut(s)	193, 261, 658
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	393, 456
Eco57I	CTGAAG	2 cut(s)	488, 692
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	613
FaeI	CATG	3 cut(s)	288, 383, 449
FatI	CATG	3 cut(s)	284, 379, 445
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	128, 238, 241, 711
FokI	GGATG	2 cut(s)	620, 638
Fsp4HI	GCNGC	4 cut(s)	128, 238, 241, 711
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	128, 238, 241, 711
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	3 cut(s)	60, 138, 369
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	288, 383, 449
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	3 cut(s)	60, 138, 369
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	6 cut(s)	37, 259, 302, 413, 454, 600
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4V	TGCA	5 cut(s)	79, 115, 322, 611, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	2 cut(s)	26, 123
Hsp92II	CATG	3 cut(s)	288, 383, 449
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	193, 261, 658
LmnI	GCTCC	2 cut(s)	206, 584
LpnPI	CCDG	9 cut(s)	73, 151, 192, 219, 287, 382, 439, 473, 650
Lsp1109I	GCAGC	3 cut(s)	114, 227, 697
LweI	GCATC	4 cut(s)	66, 102, 598, 620
MaeIII	GTNAC	2 cut(s)	364, 619
MalI	GATC	3 cut(s)	195, 263, 660
MbiI	CCGCTC	1 cut(s)	605
MboI	GATC	3 cut(s)	193, 261, 658
MboII	GAAGA	7 cut(s)	145, 328, 416, 494, 653, 664, 685
MluCI	AATT	5 cut(s)	4, 169, 247, 307, 498
MnlI	CCTC	7 cut(s)	21, 33, 169, 175, 275, 443, 568
Mph1103I	ATGCAT	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	3 cut(s)	389, 494, 540
MslI	CAYNNNNRTG	1 cut(s)	626
MspI	CCGG	3 cut(s)	60, 138, 369
MspR9I	CCNGG	2 cut(s)	138, 207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	3 cut(s)	110, 187, 237
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	193, 261, 658
NlaIII	CATG	3 cut(s)	288, 383, 449
NlaIV	GGNNCC	1 cut(s)	431
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	613
OliI	CACNNNNGTG	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	441
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	129, 239, 242, 712
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	2 cut(s)	393, 456
RsaI	GTAC	2 cut(s)	149, 329
RsaNI	GTAC	2 cut(s)	148, 328
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	3 cut(s)	389, 494, 540
SatI	GCNGC	4 cut(s)	128, 238, 241, 711
Sau3AI	GATC	3 cut(s)	193, 261, 658
Sau96I	GGNCC	2 cut(s)	393, 456
ScaI	AGTACT	2 cut(s)	149, 329
ScrFI	CCNGG	2 cut(s)	138, 207
SetI	ASST	8 cut(s)	27, 106, 129, 161, 167, 203, 492, 712
SfaNI	GCATC	4 cut(s)	66, 102, 598, 620
SinI	GGWCC	2 cut(s)	393, 456
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	5 cut(s)	4, 169, 247, 307, 498
SsiI	CCGC	4 cut(s)	237, 405, 511, 605
StyD4I	CCNGG	2 cut(s)	136, 205
TaaI	ACNGT	1 cut(s)	699
TaqI	TCGA	4 cut(s)	100, 267, 471, 646
TaqII	GACCGA	1 cut(s)	410
TasI	AATT	5 cut(s)	4, 169, 247, 307, 498
TatI	WGTACW	2 cut(s)	147, 327
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	389, 494, 540
Tru9I	TTAA	3 cut(s)	389, 494, 540
TscAI	CASTG	2 cut(s)	675, 704
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	3 cut(s)	127, 240, 710
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	3 cut(s)	17, 414, 585
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	2 cut(s)	675, 704
VpaK11BI	GGWCC	2 cut(s)	393, 456
XapI	RAATTY	3 cut(s)	4, 247, 498
XmnI	GAANNNNTTC	1 cut(s)	420
ZrmI	AGTACT	2 cut(s)	149, 329
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.