Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Reverse (-)

47432960 .. 47433217

Gene Structure 258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAATTCCATCATAATAACCAAGCTGAGGCCATTCGTGAGGACATTTCTAAAGGAAGCCGGTCAAATGTTTGAGATGCACATATACACAATGGGCTGTCAAGCCTACGCGATGCAAATGGCTGAGCTGCTTGACCCCGGAAAAGAGTACTTCTCCACCTCCACCTCCAGTTCTAAAATAACATCGCGTGATGATCATAGCTCCCCAGGACAAAAGAAGTGTCTAAATCTTGTGCGCGGCTGCCAAAATTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

85

Amino Acids

9.6

Weight (kDa)

8.91

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	7 - 62	2e-11	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	110, 187, 237
AciI	CCGC	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	4, 247
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	25, 127, 201
AluI	AGCT	3 cut(s)	25, 127, 201
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	127, 240
ApoI	RAATTY	2 cut(s)	4, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AspLEI	GCGC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	114, 227
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	207
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	138
BisI	GCNGC	3 cut(s)	128, 238, 241
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	3 cut(s)	129, 239, 242
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	138, 207
BmrFI	CCNGG	2 cut(s)	138, 207
BmsI	GCATC	2 cut(s)	66, 102
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	26
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	136, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	136, 205
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	17, 114
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	114, 227
Bsh1236I	CGCG	3 cut(s)	110, 187, 237
BshFI	GGCC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	60, 138
BslI	CCNNNNNNNGG	1 cut(s)	27
BsnI	GGCC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	193
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	18, 115
BspFNI	CGCG	3 cut(s)	110, 187, 237
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	136, 205
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	26, 123
BstFNI	CGCG	3 cut(s)	110, 187, 237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	136, 205
BstUI	CGCG	3 cut(s)	110, 187, 237
BstV1I	GCAGC	2 cut(s)	114, 227
BsuRI	GGCC	1 cut(s)	31
BtgZI	GCGATG	2 cut(s)	125, 168
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	148
CviJI	RGCY	9 cut(s)	25, 31, 59, 96, 104, 122, 127, 201, 240
CviKI_1	RGCY	9 cut(s)	25, 31, 59, 96, 104, 122, 127, 201, 240
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	26, 123
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	205
FaiI	YATR	4 cut(s)	14, 83, 85, 198
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	128, 238, 241
Fsp4HI	GCNGC	3 cut(s)	128, 238, 241
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	128, 238, 241
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	60, 138
HhaI	GCGC	1 cut(s)	237
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HpaII	CCGG	2 cut(s)	60, 138
Hpy188III	TCNNGA	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	79, 115
HpyF3I	CTNAG	2 cut(s)	26, 123
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	5 cut(s)	73, 151, 181, 192, 219
Lsp1109I	GCAGC	2 cut(s)	114, 227
LweI	GCATC	2 cut(s)	66, 102
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MluCI	AATT	3 cut(s)	4, 247, 253
MnlI	CCTC	4 cut(s)	21, 33, 169, 175
MseI	TTAA	1 cut(s)	256
MspI	CCGG	2 cut(s)	60, 138
MspR9I	CCNGG	2 cut(s)	138, 207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	3 cut(s)	110, 187, 237
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	129, 239, 242
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	256
SatI	GCNGC	3 cut(s)	128, 238, 241
Sau3AI	GATC	1 cut(s)	193
ScaI	AGTACT	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	138, 207
SetI	ASST	5 cut(s)	27, 129, 161, 167, 203
SfaNI	GCATC	2 cut(s)	66, 102
Sse9I	AATT	3 cut(s)	4, 247, 253
SsiI	CCGC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	136, 205
TasI	AATT	3 cut(s)	4, 247, 253
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	256
Tru9I	TTAA	1 cut(s)	256
TseI	GCWGC	2 cut(s)	127, 240
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	4, 247
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.