Rroxscaffold_7G00156710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004854
Physical Location & Seq
Reverse (-)
649969 .. 653299
3331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156710.1

Sequence Viewer

Length: 768 bp
ATGGAAATAGATGGCAGGTTGAATGGCGATGAATTCTCTACGGGGCCGGTACAGAAACGCCGGTGTCTCTCACACTCGGCGGTGGTCTCCGGTGACGCGGGGAGATTGATGGATATTCCGGTTCTGGAAAGCCCGGAATTGACTCAAGCATTGATGGTGATTGACAGGTACGATGATTTAGGTGGAAATGGGCGGAAGTTCGGAGGGTGTTCGAGCGACCCAAAATTAGTGGAGTTGACCTCTGGAGCTTTAAGTGTCCCCACTGTTAGTGGAGGGAATTTCACTGATTTAATTATTCCCAAAGTTAGTGGGGGAAATCCTGGTGAGTTAATTACTTCCAAAACTAGTGGCGTGGTTAAAGGAATGTCTCATAAAATTGATAAAAGTAACGGGCCCGTTGTTGAAGTTTTGCATGGAGAAGTTTCTAGAAATTTCTCACGTACTGGCGACCTTGGGAAGGCTAGGTGTGCTAAAAATGAGTCTTTGGGGGATCGAGTTGAGGCCGGTGTTATAGAAATGTCCAATGTGCAATCTGGGGAGCAAGTTATGAAGAGTGATGAGGAAACTGGGAAGGCTGAGGGTGGTGTCGTAATGAAGAAGGAAAGAAAGAACAGATCAGGTGGGAGAATGGTTTCAAACTCGAAAGCTAAGATTCAGGAGGGCATTCAGGGCAGTCGTGGTTCTGGGCCGGCTGCAGCCCAGACGACCTTCCATGTGGTTCCGCCATCGCTTACAAACATTGATACTCACTCTCACTATACTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

26.87

Weight (kDa)

7.06

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 6
AccII CGCG 1 cut(s) 98
AciI CCGC 4 cut(s) 80, 98, 193, 722
AclWI GGATC 1 cut(s) 498
AcsI RAATTY 3 cut(s) 32, 277, 430
AfaI GTAC 3 cut(s) 51, 170, 442
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 3 cut(s) 22, 404, 636
AhlI ACTAGT 1 cut(s) 344
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 2 cut(s) 248, 647
AluI AGCT 2 cut(s) 248, 647
Alw26I GTCTC 3 cut(s) 71, 91, 372
AlwI GGATC 1 cut(s) 498
AoxI GGCC 4 cut(s) 44, 392, 501, 686
ApaI GGGCCC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 692, 695
ApoI RAATTY 3 cut(s) 32, 277, 430
Asp700I GAANNNNTTC 1 cut(s) 631
AspS9I GGNCC 4 cut(s) 44, 392, 393, 686
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 104, 169, 335
BaeGI GKGCMC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 679, 707
BccI CCATC 4 cut(s) 5, 103, 148, 733
BciT130I CCWGG 1 cut(s) 321
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 3 cut(s) 71, 91, 372
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 3 cut(s) 345, 426, 462
BfmI CTRYAG 1 cut(s) 693
BfuAI ACCTGC 1 cut(s) 6
BisI GCNGC 2 cut(s) 693, 696
BlsI GCNGC 2 cut(s) 694, 697
Bme1390I CCNGG 2 cut(s) 134, 321
BmgT120I GGNCC 4 cut(s) 44, 392, 393, 686
BmiI GGNNCC 3 cut(s) 45, 394, 720
BmrFI CCNGG 2 cut(s) 134, 321
BmrI ACTGGG 1 cut(s) 576
BmuI ACTGGG 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 2 cut(s) 89, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse118I RCCGGY 4 cut(s) 46, 60, 503, 688
Bse1I ACTGG 2 cut(s) 448, 571
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 2 cut(s) 448, 571
BseSI GKGCMC 1 cut(s) 396
BseXI GCAGC 2 cut(s) 679, 707
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 4 cut(s) 46, 394, 503, 688
BsiSI CCGG 7 cut(s) 47, 61, 90, 119, 134, 504, 689
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 3 cut(s) 71, 91, 372
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 4 cut(s) 46, 394, 503, 688
Bso31I GGTCTC 1 cut(s) 91
Bsp120I GGGCCC 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 2 cut(s) 490, 614
BspACI CCGC 4 cut(s) 80, 98, 193, 722
BspANI GGCC 4 cut(s) 46, 394, 503, 688
BspCNI CTCAG 1 cut(s) 568
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 3 cut(s) 45, 394, 720
BspMAI CTGCAG 1 cut(s) 697
BspMI ACCTGC 1 cut(s) 6
BspPI GGATC 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 91
BsrFI RCCGGY 4 cut(s) 46, 60, 503, 688
BsrI ACTGG 2 cut(s) 448, 571
BssAI RCCGGY 4 cut(s) 46, 60, 503, 688
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 490, 614
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 690
BstDEI CTNAG 2 cut(s) 576, 648
BstENI CCTNNNNNAGG 1 cut(s) 455
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 2 cut(s) 493, 617
BstMAI GTCTC 3 cut(s) 71, 91, 372
BstMBI GATC 2 cut(s) 490, 614
BstMWI GCNNNNNNNGC 2 cut(s) 467, 669
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 2 cut(s) 132, 319
BstSFI CTRYAG 1 cut(s) 693
BstSLI GKGCMC 1 cut(s) 396
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 679, 707
BsuRI GGCC 4 cut(s) 46, 394, 503, 688
BtgZI GCGATG 2 cut(s) 42, 711
BtsIMutI CAGTG 2 cut(s) 261, 282
BveI ACCTGC 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 690
Cfr10I RCCGGY 4 cut(s) 46, 60, 503, 688
Cfr13I GGNCC 4 cut(s) 44, 392, 393, 686
CseI GACGC 1 cut(s) 104
Csp6I GTAC 3 cut(s) 50, 169, 441
CspCI CAANNNNNGTGG 6 cut(s) 210, 245, 289, 324, 328, 363
CviAII CATG 2 cut(s) 413, 713
CviQI GTAC 3 cut(s) 50, 169, 441
DdeI CTNAG 2 cut(s) 576, 648
DpnI GATC 2 cut(s) 492, 616
DpnII GATC 2 cut(s) 490, 614
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
EciI GGCGGA 2 cut(s) 208, 711
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 2 cut(s) 416, 716
FaiI YATR 6 cut(s) 372, 414, 512, 548, 714, 759
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 412, 712
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 693, 696
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 693, 696
FspBI CTAG 3 cut(s) 345, 426, 462
GluI GCNGC 2 cut(s) 693, 696
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 4 cut(s) 46, 394, 503, 688
HapII CCGG 7 cut(s) 47, 61, 90, 119, 134, 504, 689
HgaI GACGC 1 cut(s) 104
Hin1II CATG 2 cut(s) 416, 716
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 3 cut(s) 142, 479, 652
HpaII CCGG 7 cut(s) 47, 61, 90, 119, 134, 504, 689
HphI GGTGA 3 cut(s) 104, 169, 335
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 4 cut(s) 125, 243, 426, 656
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 4 cut(s) 451, 565, 592, 718
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 3 cut(s) 412, 529, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 669
HpyF3I CTNAG 2 cut(s) 576, 648
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 2 cut(s) 416, 716
KroI GCCGGC 1 cut(s) 688
KroNI GCCGGC 1 cut(s) 690
Kzo9I GATC 2 cut(s) 490, 614
LmnI GCTCC 2 cut(s) 245, 538
Lsp1109I GCAGC 2 cut(s) 679, 707
MaeI CTAG 3 cut(s) 345, 426, 462
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 2 cut(s) 92, 386
MalI GATC 2 cut(s) 492, 616
MboI GATC 2 cut(s) 490, 614
MboII GAAGA 2 cut(s) 562, 607
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 8 cut(s) 32, 137, 224, 277, 291, 330, 375, 430
MlyI GAGTC 2 cut(s) 136, 488
MnlI CCTC 7 cut(s) 197, 250, 266, 493, 553, 571, 652
MroNI GCCGGC 1 cut(s) 688
MroXI GAANNNNTTC 1 cut(s) 631
MseI TTAA 4 cut(s) 251, 290, 329, 357
MspI CCGG 7 cut(s) 47, 61, 90, 119, 134, 504, 689
MspR9I CCNGG 2 cut(s) 134, 321
Mva1269I GAATGC 1 cut(s) 663
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 467, 669
NaeI GCCGGC 1 cut(s) 690
NciI CCSGG 1 cut(s) 134
NdeII GATC 2 cut(s) 490, 614
NgoMIV GCCGGC 1 cut(s) 688
NlaIII CATG 2 cut(s) 416, 716
NlaIV GGNNCC 3 cut(s) 45, 394, 720
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 92
PctI GAATGC 1 cut(s) 663
PdiI GCCGGC 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 631
PfeI GAWTC 1 cut(s) 652
PkrI GCNGC 2 cut(s) 694, 697
PleI GAGTC 2 cut(s) 136, 487
PpsI GAGTC 2 cut(s) 136, 487
Ppu21I YACGTR 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 3 cut(s) 45, 394, 720
PspOMI GGGCCC 1 cut(s) 392
PspPI GGNCC 4 cut(s) 44, 392, 393, 686
PstI CTGCAG 1 cut(s) 697
RsaI GTAC 3 cut(s) 51, 170, 442
RsaNI GTAC 3 cut(s) 50, 169, 441
SaqAI TTAA 4 cut(s) 251, 290, 329, 357
SatI GCNGC 2 cut(s) 693, 696
Sau3AI GATC 2 cut(s) 490, 614
Sau96I GGNCC 4 cut(s) 44, 392, 393, 686
SchI GAGTC 2 cut(s) 136, 488
ScrFI CCNGG 2 cut(s) 134, 321
SduI GDGCHC 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 693
SgrAI CRCCGGYG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 8 cut(s) 32, 137, 224, 277, 291, 330, 375, 430
SsiI CCGC 4 cut(s) 80, 98, 193, 722
SspMI CTAG 3 cut(s) 345, 426, 462
StyD4I CCNGG 2 cut(s) 132, 319
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 442
TaqI TCGA 3 cut(s) 212, 493, 641
TasI AATT 8 cut(s) 32, 137, 224, 277, 291, 330, 375, 430
TfiI GAWTC 1 cut(s) 652
Tru1I TTAA 4 cut(s) 251, 290, 329, 357
Tru9I TTAA 4 cut(s) 251, 290, 329, 357
TscAI CASTG 2 cut(s) 268, 289
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 2 cut(s) 692, 695
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 45, 563, 608
TspRI CASTG 2 cut(s) 268, 289
XagI CCTNNNNNAGG 1 cut(s) 455
XapI RAATTY 3 cut(s) 32, 277, 430
XbaI TCTAGA 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 631
XspI CTAG 3 cut(s) 345, 426, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.