Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Reverse (-)

40416813 .. 40417259

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG238000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCAAAAGTACTATTTCTTCAAATCCACTTGTCATCTCAATAATGTTACCGGTCAATCTCATGCCGAGTTAAGGACCGATGAAAGCGGTTATCTTGAACACATTCTTCGGTGTCTTAAGCGAATCCATGATATCTGGACCAACAATCCTATCGACATTGATGTAAGGCAGGTGTTAAAAATTCATCGGAAGCGGGTGTTGAAGGGGTGTGTGATTGTTTTTAACTCTCATAACACTAATCTGTGGAAAATGGCAGAGGAGTTGGGAGCAACTTGTTCATCACGAGCGGATGCATCATCAGTCATGCATGTGGTTGCAATAAATGCTCCAACGAAGAATGATCTTCTGGCACTGAAGAACAAGTTTTTGGTCTGCCCACAGTGGATTGAAGCTGCGAGTTACTTGTGGGAAAAACAACCTGAACATAAGTTCTCCATCTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

148

Amino Acids

17.17

Weight (kDa)

9.01

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	287
AciI	CCGC	3 cut(s)	87, 193, 287
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflII	CTTAAG	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	5 cut(s)	22, 98, 202, 389, 442
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	180
AsiGI	ACCGGT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	75, 138
AvaII	GGWCC	2 cut(s)	75, 138
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
BmcAI	AGTACT	1 cut(s)	11
Bme18I	GGWCC	2 cut(s)	75, 138
BmgT120I	GGNCC	2 cut(s)	75, 138
BmsI	GCATC	2 cut(s)	280, 302
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	50
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	379
BshTI	ACCGGT	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	3 cut(s)	87, 193, 287
BspMI	ACCTGC	1 cut(s)	160
BspTI	CTTAAG	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	1 cut(s)	340
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	381
BstAFI	CTTAAG	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	350, 386
BveI	ACCTGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	75, 138
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	50
CviAII	CATG	4 cut(s)	62, 128, 304, 308
CviJI	RGCY	1 cut(s)	392
CviKI_1	RGCY	1 cut(s)	392
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	75, 138
Eco57I	CTGAAG	1 cut(s)	374
EcoRV	GATATC	1 cut(s)	133
EcoT22I	ATGCAT	2 cut(s)	295, 309
FaeI	CATG	4 cut(s)	65, 131, 307, 311
FaiI	YATR	6 cut(s)	63, 129, 231, 305, 309, 426
FatI	CATG	4 cut(s)	61, 127, 303, 307
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	4 cut(s)	65, 131, 307, 311
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	3 cut(s)	95, 136, 282
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	4, 293, 307, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
Hsp92II	CATG	4 cut(s)	65, 131, 307, 311
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	2 cut(s)	266, 331
LpnPI	CCDG	5 cut(s)	64, 121, 155, 332, 432
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	280, 302
MaeIII	GTNAC	2 cut(s)	46, 398
MalI	GATC	1 cut(s)	342
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	1 cut(s)	340
MboII	GAAGA	6 cut(s)	10, 98, 335, 346, 367, 430
MluCI	AATT	2 cut(s)	180, 442
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	1 cut(s)	250
Mph1103I	ATGCAT	2 cut(s)	295, 309
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	5 cut(s)	71, 117, 176, 222, 445
MslI	CAYNNNNRTG	1 cut(s)	308
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	65, 131, 307, 311
NmeAIII	GCCGAG	1 cut(s)	91
NsiI	ATGCAT	2 cut(s)	295, 309
NspI	RCATGY	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	123
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	75, 138
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	5 cut(s)	71, 117, 176, 222, 445
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	2 cut(s)	75, 138
ScaI	AGTACT	1 cut(s)	11
SetI	ASST	3 cut(s)	174, 394, 421
SfaNI	GCATC	2 cut(s)	280, 302
SinI	GGWCC	2 cut(s)	75, 138
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	180, 442
SsiI	CCGC	3 cut(s)	87, 193, 287
TaaI	ACNGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	153
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	180, 442
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	5 cut(s)	71, 117, 176, 222, 445
Tru9I	TTAA	5 cut(s)	71, 117, 176, 222, 445
TscAI	CASTG	2 cut(s)	357, 386
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	96, 173, 267
TspRI	CASTG	2 cut(s)	357, 386
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	75, 138
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	102
ZrmI	AGTACT	1 cut(s)	11
Zsp2I	ATGCAT	2 cut(s)	295, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.