Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Reverse (-)

50030139 .. 50030426

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGTCACCTGATCAATTCCATTGCTTCGTATCTTGAGAGAGCACTGAAATCAAATTCCAAGTCATATGCGACACAAAACAAAAAACTTCACTTGGTACTTGATCTTGATCACACGCTACTGCATTCCACTTCACTCAAAAATTTGACGCCCCTAGAAGAATACTTGATCACCAAACCAGATGATCCATCTCTGCACGGTGATGTTTTCATGAATTCCATCATAATAACCAAGTTGAGGCCGGCCATTCGTGAGGACATTTCTAAAGGAAGCCAGTCAAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

95

Amino Acids

10.67

Weight (kDa)

8.06

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	3 cut(s)	55, 142, 214
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	237
Alw21I	GWGCWC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	2 cut(s)	239, 243
ApoI	RAATTY	3 cut(s)	55, 142, 214
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AsuHPI	GGTGA	2 cut(s)	163, 212
Bbv12I	GWGCWC	1 cut(s)	46
BccI	CCATC	2 cut(s)	196, 227
BclI	TGATCA	3 cut(s)	12, 109, 168
BfaI	CTAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	241, 245
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	241, 245
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	12, 103, 109, 168, 184
BspANI	GGCC	2 cut(s)	241, 245
BspHI	TCATGA	1 cut(s)	210
BspPI	GGATC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	5 cut(s)	12, 103, 109, 168, 184
BssNI	GRCGYC	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	243
BstKTI	GATC	5 cut(s)	15, 106, 112, 171, 187
BstMBI	GATC	5 cut(s)	12, 103, 109, 168, 184
BsuRI	GGCC	2 cut(s)	241, 245
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	243
CciI	TCATGA	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	241
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	3 cut(s)	241, 245, 273
CviKI_1	RGCY	3 cut(s)	241, 245, 273
CviQI	GTAC	1 cut(s)	98
DpnI	GATC	5 cut(s)	14, 105, 111, 170, 186
DpnII	GATC	5 cut(s)	12, 103, 109, 168, 184
EaeI	YGGCCR	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	214
FaiI	YATR	4 cut(s)	67, 69, 212, 224
FatI	CATG	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	3 cut(s)	12, 109, 168
FseI	GGCCGGCC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	241, 245
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	214
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	163, 212
Hpy188III	TCNNGA	4 cut(s)	35, 107, 211, 251
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	124, 196
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	3 cut(s)	12, 109, 168
Kzo9I	GATC	5 cut(s)	12, 103, 109, 168, 184
LpnPI	CCDG	3 cut(s)	23, 192, 255
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	5 cut(s)	14, 105, 111, 170, 186
MboI	GATC	5 cut(s)	12, 103, 109, 168, 184
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	4 cut(s)	16, 55, 142, 214
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	231, 247
MroNI	GCCGGC	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	124
NaeI	GCCGGC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	5 cut(s)	12, 103, 109, 168, 184
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	5
PagI	TCATGA	1 cut(s)	210
PctI	GAATGC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	243
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
RigI	GGCCGGCC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	201
Sau3AI	GATC	5 cut(s)	12, 103, 109, 168, 184
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	4 cut(s)	16, 55, 142, 214
SspMI	CTAG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	200
TasI	AATT	4 cut(s)	16, 55, 142, 214
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	199, 227
TspRI	CASTG	1 cut(s)	51
XapI	RAATTY	3 cut(s)	55, 142, 214
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.