Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Forward (+)

9246706 .. 9247269

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTGAGTTGCTTGACCCCGAAAAAGACTACTTCTTCACTTCCAGCTCTAGAGTAATATCGTGCAACGATCACAGCTCCCGAGGACAAAAGAAGTGTCTAGATCTTGTGCGCGGTTGTGAAGATTCTAATGTCTTGATCCTTGACGATACTCGAGAGGCATGGACAAAGGTATATCAGGACAATTGGATAGTAATAAAACGATATCATTTCCTCAAATACAGTTCTCAAACAATGTGCCTCAATAACCGCAAGTCTCTCGCCGAGTTGAAGACGGATGATTATGTTGAACATATTCTTCAGCTTCTTAAGCAAGTGCACGCTACATTCTTTGTTCATAAGCTGCCCAACAACAATAATTTTGGAAAGGATGTAAGGCAGATATTTTTACTAGAATCAATAATATTTGGAAAATGGCAGAGGAATTGGGGGCAACTTGTTCAACTCAAGGGGATGAACCATCAGTCACCCATGTGGTTGCAACATATACTCGAACGTAAGAATTCTCTTCCAGCAGTGAAGAACAAAAAGCTGTTGGTCCGCCGAGAATGGGTTGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

187

Amino Acids

22.19

Weight (kDa)

9.26

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	114
AciI	CCGC	3 cut(s)	114, 250, 541
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	550
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	271, 290, 443, 557
AleI	CACNNNNGTG	1 cut(s)	472
AluBI	AGCT	5 cut(s)	48, 78, 304, 343, 532
AluI	AGCT	5 cut(s)	48, 78, 304, 343, 532
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	261
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	81, 153
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	502
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	459
AvaI	CYCGRG	2 cut(s)	81, 153
AvaII	GGWCC	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	1 cut(s)	468
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	3 cut(s)	51, 101, 392
BfrI	CTTAAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	538
BmeT110I	CYCGRG	2 cut(s)	81, 153
BmgT120I	GGNCC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	3 cut(s)	283, 376, 459
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	2 cut(s)	81, 153
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	261
BsoBI	CYCGRG	2 cut(s)	81, 153
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	70, 103, 138
BspACI	CCGC	3 cut(s)	114, 250, 541
BspFNI	CGCG	1 cut(s)	114
BspPI	GGATC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	70, 103, 138
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	513
BstAFI	CTTAAG	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	283, 376, 459
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	73, 106, 141
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	3 cut(s)	70, 103, 138
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	283, 376, 459
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	538
CviAII	CATG	2 cut(s)	162, 472
CviJI	RGCY	6 cut(s)	5, 48, 78, 304, 343, 532
CviKI_1	RGCY	6 cut(s)	5, 48, 78, 304, 343, 532
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	72, 105, 140
DpnII	GATC	3 cut(s)	70, 103, 138
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	530
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	2 cut(s)	81, 153
EcoRI	GAATTC	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	206
FaeI	CATG	2 cut(s)	165, 475
FaiI	YATR	8 cut(s)	163, 175, 285, 294, 339, 473, 486, 488
FatI	CATG	2 cut(s)	161, 471
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	3 cut(s)	290, 383, 466
Fsp4HI	GCNGC	1 cut(s)	344
FspBI	CTAG	3 cut(s)	51, 101, 392
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	165, 475
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	3 cut(s)	125, 395, 557
HphI	GGTGA	1 cut(s)	459
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188III	TCNNGA	6 cut(s)	51, 81, 101, 136, 155, 179
Hpy8I	GTNNAC	1 cut(s)	319
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	3 cut(s)	66, 319, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	2 cut(s)	165, 475
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	70, 103, 138
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	3 cut(s)	58, 164, 525
Lsp1109I	GCAGC	1 cut(s)	330
MaeI	CTAG	3 cut(s)	51, 101, 392
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	3 cut(s)	72, 105, 140
MboI	GATC	3 cut(s)	70, 103, 138
MboII	GAAGA	6 cut(s)	28, 134, 283, 290, 500, 532
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	4 cut(s)	184, 358, 424, 502
MnlI	CCTC	5 cut(s)	77, 151, 224, 251, 414
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	2 cut(s)	309, 562
MslI	CAYNNNNRTG	1 cut(s)	472
MspCI	CTTAAG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	3 cut(s)	70, 103, 138
NlaIII	CATG	2 cut(s)	165, 475
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	465
OliI	CACNNNNGTG	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	125, 395, 557
PkrI	GCNGC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	472
SaqAI	TTAA	2 cut(s)	309, 562
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	3 cut(s)	70, 103, 138
Sau96I	GGNCC	1 cut(s)	538
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	7 cut(s)	50, 80, 174, 306, 345, 499, 534
Sfr274I	CTCGAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	472
SmlI	CTYRAG	3 cut(s)	153, 308, 446
SmoI	CTYRAG	3 cut(s)	153, 308, 446
Sse9I	AATT	4 cut(s)	184, 358, 424, 502
SsiI	CCGC	3 cut(s)	114, 250, 541
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	3 cut(s)	51, 101, 392
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	154, 492
TasI	AATT	4 cut(s)	184, 358, 424, 502
TfiI	GAWTC	3 cut(s)	125, 395, 557
Tru1I	TTAA	2 cut(s)	309, 562
Tru9I	TTAA	2 cut(s)	309, 562
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	326, 470
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	522
Vha464I	CTTAAG	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	502
XbaI	TCTAGA	2 cut(s)	50, 100
XhoI	CTCGAG	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	51, 101, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.