Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Forward (+)

81609126 .. 81609845

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036532

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGATAACCAAGTTGAGGCCCTTTGTCGGGACATTTCTCAAAGAAGCCAGTCACATGTTTGAGATGCACATATACACAACAGGCAATCGAGCTTATGCATTGCAAATGGCTGAGTTGCTTGACCCCGAACAAGAGTACTTCTTCACTTCTAGCTCTAGAGTAATATCGTGCAACAACCACAGCTCCCGAGGACAAAAGAAGCGTCTAGATCTTGTGCGTGGTTGTGAAGATTCTAATGTCTTGATCCTTGACGATACACGAGAGGCATGGACAGAGGAAAATCAAGACAATTTGATAGTAATAAGACGATATTATTACTTCAAATACAGTTCTCAAACAAATTGCCTCAATAACCGCAAGTCTCTTGCCGAGTTGAAGACGGATGAAAATGATTATCTTGAACATATTCTTCAGCTTCTTAAGCAAGTCCACGCTATGTTCTTTGTTCATAAGCTGCCCAACAAGAATAACTTTGGAAATGATGTAAGGCAGGTGTTAAAGACTCTTCGGAAACGAGTGTTGAAAGGCTGTGAGATCGTTTTCGACTGTCATGATGTAACTAGAATCAATAATATTTCGAAAATGGCAGAGGAGTTGGGAGCAACTTGTTCAGCTCGAGTGGATGCACCATCAGTCACCCATGTGGTTGCAACAAATACTCGAACCAAGAATTCTCTTCTGGCAGTGAAGAATAAGAAGCTGTTGGTCCGCCGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

240

Amino Acids

27.74

Weight (kDa)

9.18

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	3 - 124	1.6e-18	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	481
AciI	CCGC	2 cut(s)	355, 709
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	15, 26, 27
AflII	CTTAAG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	322, 376, 401, 523
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	7 cut(s)	92, 153, 183, 415, 454, 614, 700
AluI	AGCT	7 cut(s)	92, 153, 183, 415, 454, 614, 700
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	238
Ama87I	CYCGRG	2 cut(s)	186, 615
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	670
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	18, 706
AsuHPI	GGTGA	1 cut(s)	628
AsuII	TTCGAA	1 cut(s)	578
AvaI	CYCGRG	2 cut(s)	186, 615
AvaII	GGWCC	1 cut(s)	706
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	4 cut(s)	150, 156, 206, 561
BfrI	CTTAAG	1 cut(s)	419
BfuAI	ACCTGC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
BmcAI	AGTACT	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	706
BmeT110I	CYCGRG	2 cut(s)	186, 615
BmgT120I	GGNCC	2 cut(s)	18, 706
BmsI	GCATC	2 cut(s)	54, 613
BpiI	GAAGAC	1 cut(s)	383
Bpu14I	TTCGAA	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 26, 27
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	388, 628
BseLI	CCNNNNNNNGG	3 cut(s)	15, 26, 27
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	441
BshFI	GGCC	1 cut(s)	19
BsiHKCI	CYCGRG	2 cut(s)	186, 615
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	15, 26, 27
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	19
BsoBI	CYCGRG	2 cut(s)	186, 615
Bsp119I	TTCGAA	1 cut(s)	578
Bsp143I	GATC	3 cut(s)	208, 243, 534
BspACI	CCGC	2 cut(s)	355, 709
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	1 cut(s)	238
BspT104I	TTCGAA	1 cut(s)	578
BspTI	CTTAAG	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	208, 243, 534
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	329, 548
Bst6I	CTCTTC	2 cut(s)	510, 681
BstAFI	CTTAAG	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	578
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	388, 628
BstKTI	GATC	3 cut(s)	211, 246, 537
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	3 cut(s)	208, 243, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	388, 628
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	690
BveI	ACCTGC	1 cut(s)	481
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	2 cut(s)	18, 706
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	55, 267, 551, 641
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	3 cut(s)	210, 245, 536
DpnII	GATC	3 cut(s)	208, 243, 534
Eam1104I	CTCTTC	2 cut(s)	510, 681
EarI	CTCTTC	2 cut(s)	510, 681
EciI	GGCGGA	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	706
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	2 cut(s)	186, 615
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	100
FaeI	CATG	4 cut(s)	58, 270, 554, 644
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	4 cut(s)	54, 266, 550, 640
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	2 cut(s)	395, 635
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	4 cut(s)	150, 156, 206, 561
GluI	GCNGC	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	19
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	58, 270, 554, 644
HinfI	GANTC	3 cut(s)	230, 502, 564
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	8 cut(s)	28, 156, 186, 206, 241, 284, 398, 551
Hpy8I	GTNNAC	1 cut(s)	430
HpyCH4III	ACNGT	2 cut(s)	329, 548
HpyCH4V	TGCA	6 cut(s)	67, 98, 103, 171, 626, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	58, 270, 554, 644
Kzo9I	GATC	3 cut(s)	208, 243, 534
LmnI	GCTCC	2 cut(s)	188, 599
LpnPI	CCDG	4 cut(s)	61, 66, 476, 665
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	2 cut(s)	54, 613
MaeI	CTAG	4 cut(s)	150, 156, 206, 561
MaeIII	GTNAC	3 cut(s)	50, 556, 634
MalI	GATC	3 cut(s)	210, 245, 536
MboI	GATC	3 cut(s)	208, 243, 534
MboII	GAAGA	7 cut(s)	133, 239, 388, 401, 497, 668, 700
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	3 cut(s)	289, 340, 670
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	6 cut(s)	9, 182, 256, 268, 356, 583
Mph1103I	ATGCAT	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	2 cut(s)	420, 497
MslI	CAYNNNNRTG	1 cut(s)	641
MspCI	CTTAAG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeII	GATC	3 cut(s)	208, 243, 534
NlaIII	CATG	4 cut(s)	58, 270, 554, 644
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	50, 634
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	578
OliI	CACNNNNGTG	1 cut(s)	641
PaeR7I	CTCGAG	1 cut(s)	615
PagI	TCATGA	1 cut(s)	550
PaqCI	CACCTGC	1 cut(s)	481
PciI	ACATGT	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	230, 564
PkrI	GCNGC	1 cut(s)	456
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PscI	ACATGT	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	18, 706
PspXI	VCTCGAGB	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	2 cut(s)	420, 497
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	3 cut(s)	208, 243, 534
Sau96I	GGNCC	2 cut(s)	18, 706
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	1 cut(s)	496
SetI	ASST	8 cut(s)	94, 155, 185, 417, 456, 495, 616, 702
SfaNI	GCATC	2 cut(s)	54, 613
Sfr274I	CTCGAG	1 cut(s)	615
SfuI	TTCGAA	1 cut(s)	578
SinI	GGWCC	1 cut(s)	706
SlaI	CTCGAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	2 cut(s)	419, 615
SmoI	CTYRAG	2 cut(s)	419, 615
Sse9I	AATT	3 cut(s)	289, 340, 670
SsiI	CCGC	2 cut(s)	355, 709
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	4 cut(s)	150, 156, 206, 561
TaaI	ACNGT	2 cut(s)	329, 548
TaqI	TCGA	5 cut(s)	88, 543, 578, 616, 661
TasI	AATT	3 cut(s)	289, 340, 670
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	230, 564
Tru1I	TTAA	2 cut(s)	420, 497
Tru9I	TTAA	2 cut(s)	420, 497
TscAI	CASTG	1 cut(s)	690
TseFI	GTSAC	2 cut(s)	50, 634
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	2 cut(s)	50, 634
TspDTI	ATGAA	2 cut(s)	399, 437
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	690
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	706
XapI	RAATTY	1 cut(s)	670
XbaI	TCTAGA	2 cut(s)	155, 205
XceI	RCATGY	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	4 cut(s)	150, 156, 206, 561
ZrmI	AGTACT	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.