Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8181706.1

Orthogroup ID

OG0004854

Physical Location & Seq

Genomic Coordinates Forward (+)

50 .. 451

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8181706.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggcagaagagttgggagcaacttgttcatcacgagcggatgcatcatcagtcacgcatgtggttgcaataaatgctcgaacgaagaatgatcttctggcactgaagaacaagtttttggtctgcccacagtggattgaagctgcgagttacttgtgggaaaaacaacctgaacataagttctccatcaaactgcacgggaagaatgaaaaatctcctagtgctcctagtattaccggtgcagagaaaagaaacagagggcggaaagggtttgttgttggtggaaggagaaacaaggagccggtgtatggtcgtaattatgggaagacagctacgagctctgggtgtgctcctgaacgcccctccgtgatgggtccggactcgacccatcacgcacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

133

Amino Acids

14.49

Weight (kDa)

9.75

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17821 FvH4_4g17830
rosa_chinensis	RchiOBHm_Chr4g0421781 RchiOBHm_Chr4g0421791 RchiOBHm_Chr4g0421881 RchiOBHm_Chr4g0421951 RchiOBHm_Chr5g0075131 RchiOBHm_Chr7g0189971
rosa_laevigata	RLG00000007651 RLG00000019705 RLG00000036532
rosa_multiflora	Rmu_co8181706.1_g000001 Rmu_sc0011516.1_g000006 Rmu_sc0030271.1_g000001 Rmu_ssc0000217.1_g000008
rosa_roxburghii	Rroxscaffold_1G00006490 Rroxscaffold_5G00364040 Rroxscaffold_7G00156710
rosa_rugosa	Rorug07G0129200
rosa_samantha	Rh2BG403800 Rh4BG238000 Rh4BG238100 Rh4BG238300 Rh4CG250000 Rh4CG250100 Rh4DG234100 Rh5DG527800 Rh6AG087100 Rh6AG514900 Rh7AG106900 Rh7DG110100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	2 cut(s)	38, 262
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	3 cut(s)	143, 332, 339
AluI	AGCT	3 cut(s)	143, 332, 339
Alw21I	GWGCWC	3 cut(s)	226, 341, 352
Aor13HI	TCCGGA	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	143
AsiGI	ACCGGT	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	3 cut(s)	226, 341, 352
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	194, 364, 396
BfaI	CTAG	2 cut(s)	219, 228
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	300, 375
BmsI	GCATC	2 cut(s)	31, 53
BpiI	GAAGAC	1 cut(s)	332
BsaWI	WCCGGW	2 cut(s)	236, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	2 cut(s)	236, 301
BseAI	TCCGGA	1 cut(s)	376
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	2 cut(s)	179, 261
BshTI	ACCGGT	1 cut(s)	236
BsiHKAI	GWGCWC	3 cut(s)	226, 341, 352
BsiSI	CCGG	3 cut(s)	237, 302, 377
BslI	CCNNNNNNNGG	1 cut(s)	308
Bsp1286I	GDGCHC	3 cut(s)	226, 341, 352
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	2 cut(s)	38, 262
BspEI	TCCGGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	300, 375
BsrBI	CCGCTC	1 cut(s)	38
BsrFI	RCCGGY	2 cut(s)	236, 301
BssAI	RCCGGY	2 cut(s)	236, 301
BssMI	GATC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	101, 137
Cfr10I	RCCGGY	2 cut(s)	236, 301
Cfr13I	GGNCC	1 cut(s)	374
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	4 cut(s)	143, 301, 332, 339
CviKI_1	RGCY	4 cut(s)	143, 301, 332, 339
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	339
EcoT22I	ATGCAT	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	341
FaeI	CATG	1 cut(s)	62
FaiI	YATR	4 cut(s)	60, 177, 309, 321
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	219, 228
GluI	GCNGC	1 cut(s)	144
HapII	CCGG	3 cut(s)	237, 302, 377
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	3 cut(s)	237, 302, 377
Hpy188III	TCNNGA	3 cut(s)	33, 353, 377
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	44, 68, 196, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	62
Kpn2I	TCCGGA	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	4 cut(s)	17, 229, 298, 355
LpnPI	CCDG	7 cut(s)	83, 183, 250, 315, 327, 366, 390
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	31, 53
MaeI	CTAG	2 cut(s)	219, 228
MaeIII	GTNAC	2 cut(s)	52, 149
MalI	GATC	1 cut(s)	93
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	1 cut(s)	91
MboII	GAAGA	6 cut(s)	20, 86, 97, 118, 214, 337
MhlI	GDGCHC	3 cut(s)	226, 341, 352
MluCI	AATT	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	2 cut(s)	251, 373
Mph1103I	ATGCAT	1 cut(s)	46
MroI	TCCGGA	1 cut(s)	376
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	3 cut(s)	237, 302, 377
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	2 cut(s)	300, 375
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	46
NspI	RCATGY	1 cut(s)	62
OliI	CACNNNNGTG	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	300, 375
PspPI	GGNCC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	341
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	374
SduI	GDGCHC	3 cut(s)	226, 341, 352
SetI	ASST	4 cut(s)	145, 172, 334, 341
SfaNI	GCATC	2 cut(s)	31, 53
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	316
SsiI	CCGC	2 cut(s)	38, 262
SspMI	CTAG	2 cut(s)	219, 228
SstI	GAGCTC	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	79, 383
TasI	AATT	1 cut(s)	316
TscAI	CASTG	2 cut(s)	108, 137
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	18, 222
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	2 cut(s)	108, 137
VpaK11BI	GGWCC	1 cut(s)	374
XceI	RCATGY	1 cut(s)	62
XspI	CTAG	2 cut(s)	219, 228
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.