FvH4_4g18380

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005446
Physical Location & Seq
Forward (+)
22282971 .. 22283475
505 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18380.t1

Sequence Viewer

Length: 378 bp
ATGGCTATTCGTCCTTTTGGTTTAGCCTGTGTAACACTTCTTGTGCTTGTTCCTGTGCTGCTAAGTTGTTCAACATTAGTGAAGTGTCAGACGGAGGATTATTGTTCGGTTGTGTTTGAGGAATTCAGCCCTTGCCTGAGTTATGTAGGGGGGCTATCTCCCTATCCGATAGAGGATTGCTGTGAATCCATAACAAATTTGAATCATCTAGCAAAACAAGAGCAGAGTGGTCCGCAGAAGATATGTGAATGCATTGAGAACTTCTCTTATTGGACCGAAACTCGTTTCATTGCCTCCAGAATTATGGAGCTTCCTACATCATGCATGCTCCATCTTAGTTTTCCCATTTCTGATAGCATGGATTGCTCTATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.95

Weight (kDa)

4.47

Isoelectric Point (pI)

67.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 35 - 122 5.8e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AcsI RAATTY 2 cut(s) 122, 196
AgsI TTSAA 2 cut(s) 72, 202
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 2 cut(s) 122, 196
AspS9I GGNCC 2 cut(s) 230, 273
AvaII GGWCC 2 cut(s) 230, 273
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 339
BfaI CTAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme18I GGWCC 2 cut(s) 230, 273
BmgT120I GGNCC 2 cut(s) 230, 273
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 254
BspACI CCGC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 62, 137, 335
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 230, 273
CviAII CATG 3 cut(s) 321, 325, 358
CviJI RGCY 5 cut(s) 5, 26, 129, 154, 310
CviKI_1 RGCY 5 cut(s) 5, 26, 129, 154, 310
DdeI CTNAG 3 cut(s) 62, 137, 335
Eco47I GGWCC 2 cut(s) 230, 273
EcoRI GAATTC 1 cut(s) 122
EcoT22I ATGCAT 2 cut(s) 254, 326
FaeI CATG 3 cut(s) 324, 328, 361
FaiI YATR 8 cut(s) 144, 191, 244, 305, 322, 326, 359, 371
FatI CATG 3 cut(s) 320, 324, 357
Fnu4HI GCNGC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 280
Hin1II CATG 3 cut(s) 324, 328, 361
HinfI GANTC 2 cut(s) 185, 202
Hpy188I TCNGA 3 cut(s) 90, 168, 352
Hpy188III TCNNGA 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 252, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 3 cut(s) 62, 137, 335
Hsp92II CATG 3 cut(s) 324, 328, 361
LmnI GCTCC 2 cut(s) 307, 333
LpnPI CCDG 4 cut(s) 40, 66, 149, 310
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 1 cut(s) 250
MluCI AATT 3 cut(s) 122, 196, 300
MnlI CCTC 4 cut(s) 88, 112, 166, 304
Mph1103I ATGCAT 2 cut(s) 254, 326
MseI TTAA 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 363
NlaIII CATG 3 cut(s) 324, 328, 361
NsiI ATGCAT 2 cut(s) 254, 326
NspI RCATGY 1 cut(s) 328
PaeI GCATGC 1 cut(s) 328
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 185, 202
PkrI GCNGC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 230, 273
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 1 cut(s) 59
Sau96I GGNCC 2 cut(s) 230, 273
SetI ASST 1 cut(s) 312
SinI GGWCC 2 cut(s) 230, 273
SphI GCATGC 1 cut(s) 328
Sse9I AATT 3 cut(s) 122, 196, 300
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 209
TaqII GACCGA 1 cut(s) 290
TasI AATT 3 cut(s) 122, 196, 300
TfiI GAWTC 2 cut(s) 185, 202
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 230, 273
XapI RAATTY 2 cut(s) 122, 196
XceI RCATGY 1 cut(s) 328
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 2 cut(s) 254, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.