Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000200.1

Orthogroup ID

OG0005446

Physical Location & Seq

Genomic Coordinates Forward (+)

107970 .. 108347

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000200.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggctgctcgtcctttttgttttgcctgtgtaacaagtcttcttgtgcttgttcctctgctgctgctttgttcatcattagggaaggctcagacgacggagtattgcacgaatgtgttcgaggaatttagctcttgcctgggttttctcggggagttatctcctgaaccgacggcggcttgctgtgattccctgacaagtttgaattcgttagcacaacaagaggatagtggtccgaggatgatatgtgaatgcattgagagctcgtcttattggaccagaatccctttcagtgcctcccgaattcaggagctccctacatcatgccaactccatcttagtttccccatttctaatagcatggattgctccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

125

Amino Acids

13.61

Weight (kDa)

4.51

Isoelectric Point (pI)

66.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44265
fragaria_vesca	FvH4_4g18380 FvH4_4g18390 FvH4_6g26560
malus_domestica	MD06G1108000.v1.1 MD06G1108100.v1.1 MD17G1235700.v1.1
prunus_persica	Prupe.2G079300_v2.0.a1 Prupe.3G134200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0127571 RchiOBHm_Chr2g0127591
rosa_laevigata	RLG00000018952 RLG00000018954
rosa_multiflora	Rmu_co8172800.1_g000001 Rmu_sc0004744.1_g000004 Rmu_ssc0000200.1_g000021
rosa_roxburghii	Rroxscaffold_2G00116480 Rroxscaffold_2G00116550
rosa_rugosa	Rorug02G0272700 Rorug02G0273100
rosa_samantha	Rh2AG324700 Rh2AG325100 Rh2BG334000 Rh2BG334400 Rh2CG312200 Rh2CG312400 Rh2CG312600 Rh2DG352200
rosa_wichuraiana	Rw2G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	176
AcsI	RAATTY	3 cut(s)	125, 205, 303
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	138
AleI	CACNNNNGTG	1 cut(s)	113
AluBI	AGCT	3 cut(s)	132, 264, 313
AluI	AGCT	3 cut(s)	132, 264, 313
Alw21I	GWGCWC	2 cut(s)	266, 315
Ama87I	CYCGRG	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	5, 61, 64
ApoI	RAATTY	3 cut(s)	125, 205, 303
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	233, 276
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	233, 276
BanII	GRGCYC	2 cut(s)	266, 315
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	266, 315
BbvI	GCAGC	2 cut(s)	48, 51
BccI	CCATC	1 cut(s)	342
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	140
BisI	GCNGC	4 cut(s)	6, 62, 65, 177
BlsI	GCNGC	4 cut(s)	7, 63, 66, 178
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	233, 276
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	233, 276
BmrFI	CCNGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	139, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	139, 236
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	48, 51
BsiHKAI	GWGCWC	2 cut(s)	266, 315
BsiHKCI	CYCGRG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	266, 315
BspACI	CCGC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	139, 236
Bst2UI	CCWGG	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	90, 338
BstF5I	GGATG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 366
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	48, 51
BstV2I	GAAGAC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	233, 276
CviAII	CATG	2 cut(s)	324, 361
CviJI	RGCY	6 cut(s)	5, 89, 132, 179, 264, 313
CviKI_1	RGCY	6 cut(s)	5, 89, 132, 179, 264, 313
DdeI	CTNAG	2 cut(s)	90, 338
Ecl136II	GAGCTC	2 cut(s)	264, 313
Eco24I	GRGCYC	2 cut(s)	266, 315
Eco47I	GGWCC	2 cut(s)	233, 276
Eco53kI	GAGCTC	2 cut(s)	264, 313
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	2 cut(s)	264, 313
EcoRI	GAATTC	2 cut(s)	205, 303
EcoRII	CCWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	257
EcoT38I	GRGCYC	2 cut(s)	266, 315
FaeI	CATG	2 cut(s)	327, 364
FaiI	YATR	3 cut(s)	247, 325, 362
FatI	CATG	2 cut(s)	323, 360
Fnu4HI	GCNGC	4 cut(s)	6, 62, 65, 177
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	2 cut(s)	266, 315
Fsp4HI	GCNGC	4 cut(s)	6, 62, 65, 177
GluI	GCNGC	4 cut(s)	6, 62, 65, 177
Hin1II	CATG	2 cut(s)	327, 364
HinfI	GANTC	2 cut(s)	188, 282
Hpy188I	TCNGA	2 cut(s)	93, 237
Hpy188III	TCNNGA	3 cut(s)	164, 300, 308
Hpy99I	CGWCG	2 cut(s)	100, 175
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	108, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 366
HpyF3I	CTNAG	2 cut(s)	90, 338
Hsp92II	CATG	2 cut(s)	327, 364
LmnI	GCTCC	3 cut(s)	310, 318, 374
LpnPI	CCDG	7 cut(s)	40, 125, 152, 177, 206, 292, 293
Lsp1109I	GCAGC	2 cut(s)	48, 51
MaeIII	GTNAC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	266, 315
MluCI	AATT	3 cut(s)	125, 205, 303
MnlI	CCTC	5 cut(s)	66, 115, 217, 231, 307
Mph1103I	ATGCAT	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	261, 366
NlaIII	CATG	2 cut(s)	327, 364
NsiI	ATGCAT	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	113
PctI	GAATGC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	188, 282
PkrI	GCNGC	4 cut(s)	7, 63, 66, 178
Psp124BI	GAGCTC	2 cut(s)	266, 315
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	233, 276
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	2 cut(s)	266, 315
SatI	GCNGC	4 cut(s)	6, 62, 65, 177
Sau96I	GGNCC	2 cut(s)	233, 276
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	266, 315
SetI	ASST	3 cut(s)	134, 266, 315
SinI	GGWCC	2 cut(s)	233, 276
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	125, 205, 303
SsiI	CCGC	1 cut(s)	176
SstI	GAGCTC	2 cut(s)	266, 315
StyD4I	CCNGG	1 cut(s)	138
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	125, 205, 303
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	188, 282
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	3 cut(s)	5, 61, 64
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	233, 276
XapI	RAATTY	3 cut(s)	125, 205, 303
XmnI	GAANNNNTTC	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.