Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005446

Physical Location & Seq

Genomic Coordinates Forward (+)

43397853 .. 43401418

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018954

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGTCAAGCGTCCAGTTTCTGTGCTCAAGCCTGGAACGAGTTCAGCAGCTGCATGAGGTTCATCACCGGGTTATTTTCGCAACCGTCAACGCAGTGCTGTGATTCGGTGAGGAGATTGAACAAGATGGCCAAAAGTAGTGAGAACGGACCTCGCGATATATGTCAATGCATTGAGGACATGTCTCGTACATATGAAGAGAAAAGTATGGAGATATATGAATACACGACAAAGAATGTGTTACCTTACGCCATCGGTAAGTACTGTTCAATGAAGCCGTCATTTCAGCCTTGGGCTCCGGCGACCTGTCACGGCGACATCTGTGGTTATGGGAGGGATCTAGCTTTGAATCACTGTCCGATCAAGCACGGTGATGGCGATGGTGGTCATCGGAGCAGCTGCGATGCTTGTGATGGTCACCGGAGTACGTCCGGGTCTCCGTCTCGGCGGTCACATTCGTCTCGGGACGGGTACGCCGTGAAGGAGGTGATGGATCTCCTGCTCAATTCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

172

Amino Acids

18.94

Weight (kDa)

6.96

Isoelectric Point (pI)

69.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44265
fragaria_vesca	FvH4_4g18380 FvH4_4g18390 FvH4_6g26560
malus_domestica	MD06G1108000.v1.1 MD06G1108100.v1.1 MD17G1235700.v1.1
prunus_persica	Prupe.2G079300_v2.0.a1 Prupe.3G134200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0127571 RchiOBHm_Chr2g0127591
rosa_laevigata	RLG00000018952 RLG00000018954
rosa_multiflora	Rmu_co8172800.1_g000001 Rmu_sc0004744.1_g000004 Rmu_ssc0000200.1_g000021
rosa_roxburghii	Rroxscaffold_2G00116480 Rroxscaffold_2G00116550
rosa_rugosa	Rorug02G0272700 Rorug02G0273100
rosa_samantha	Rh2AG324700 Rh2AG325100 Rh2BG334000 Rh2BG334400 Rh2CG312200 Rh2CG312400 Rh2CG312600 Rh2DG352200
rosa_wichuraiana	Rw2G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	2 cut(s)	345, 501
AcoI	YGGCCR	1 cut(s)	129
AfaI	GTAC	4 cut(s)	190, 263, 427, 473
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	4 cut(s)	121, 270, 349, 510
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	51, 344, 399
AluI	AGCT	3 cut(s)	51, 344, 399
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	4 cut(s)	189, 441, 447, 465
AlwI	GGATC	2 cut(s)	345, 501
AlwNI	CAGNNNCTG	2 cut(s)	21, 51
Ama87I	CYCGRG	1 cut(s)	462
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	4 cut(s)	48, 51, 396, 399
Asp700I	GAANNNNTTC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	70, 433
AsuHPI	GGTGA	5 cut(s)	58, 121, 383, 410, 499
AvaI	CYCGRG	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	4 cut(s)	38, 60, 386, 408
BccI	CCATC	6 cut(s)	121, 260, 368, 374, 407, 484
BceAI	ACGGC	3 cut(s)	262, 328, 461
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	2 cut(s)	70, 433
BcoDI	GTCTC	4 cut(s)	189, 441, 447, 465
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	4 cut(s)	49, 52, 397, 400
BlsI	GCNGC	4 cut(s)	50, 53, 398, 401
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	34, 70, 433
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	3 cut(s)	34, 70, 433
BmsI	GCATC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	12
BpuMI	CCSGG	2 cut(s)	70, 433
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	4 cut(s)	38, 60, 386, 408
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	4 cut(s)	69, 299, 421, 432
BslFI	GGGAC	1 cut(s)	479
BsmAI	GTCTC	4 cut(s)	189, 441, 447, 465
BsmBI	CGTCTC	2 cut(s)	447, 465
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	441
BsoBI	CYCGRG	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	28, 298
Bsp143I	GATC	3 cut(s)	337, 360, 493
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	2 cut(s)	345, 501
BspTNI	GGTCTC	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	3 cut(s)	337, 360, 493
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	4 cut(s)	87, 266, 356, 371
Bst6I	CTCTTC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	513
BstEII	GGTNACC	1 cut(s)	416
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	340, 363, 496
BstMAI	GTCTC	4 cut(s)	189, 441, 447, 465
BstMBI	GATC	3 cut(s)	337, 360, 493
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	184
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	3 cut(s)	32, 68, 431
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	38, 60, 386, 408
BstX2I	RGATCY	2 cut(s)	337, 493
BstYI	RGATCY	2 cut(s)	337, 493
BsuRI	GGCC	1 cut(s)	131
BtgZI	GCGATG	2 cut(s)	393, 417
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 352
BtuMI	TCGCGA	1 cut(s)	156
CaiI	CAGNNNCTG	2 cut(s)	21, 51
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	4 cut(s)	189, 262, 426, 472
CviAII	CATG	2 cut(s)	55, 181
CviJI	RGCY	8 cut(s)	32, 51, 131, 277, 289, 296, 344, 399
CviKI_1	RGCY	8 cut(s)	32, 51, 131, 277, 289, 296, 344, 399
CviQI	GTAC	4 cut(s)	189, 262, 426, 472
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	3 cut(s)	339, 362, 495
DpnII	GATC	3 cut(s)	337, 360, 493
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	290
EcoT22I	ATGCAT	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	290
Esp3I	CGTCTC	2 cut(s)	447, 465
FaeI	CATG	2 cut(s)	58, 184
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	54, 180
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	49, 52, 397, 400
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	49, 52, 397, 400
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	4 cut(s)	49, 52, 397, 400
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	4 cut(s)	69, 299, 421, 432
Hin1II	CATG	2 cut(s)	58, 184
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	104, 349
HpaII	CCGG	4 cut(s)	69, 299, 421, 432
HphI	GGTGA	5 cut(s)	58, 121, 383, 410, 499
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	360, 393
Hpy188III	TCNNGA	2 cut(s)	155, 464
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	4 cut(s)	87, 266, 356, 371
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	2 cut(s)	54, 171
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	2 cut(s)	58, 184
Kzo9I	GATC	3 cut(s)	337, 360, 493
LmnI	GCTCC	2 cut(s)	301, 393
LpnPI	CCDG	9 cut(s)	19, 28, 46, 82, 312, 319, 434, 445, 512
Lsp1109I	GCAGC	4 cut(s)	38, 60, 386, 408
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	4 cut(s)	240, 308, 416, 450
MalI	GATC	3 cut(s)	339, 362, 495
MboI	GATC	3 cut(s)	337, 360, 493
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	2 cut(s)	337, 493
MhlI	GDGCHC	2 cut(s)	28, 298
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	1 cut(s)	505
MluNI	TGGCCA	1 cut(s)	131
MnlI	CCTC	6 cut(s)	51, 105, 162, 169, 327, 478
Mox20I	TGGCCA	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	51, 399
MspI	CCGG	4 cut(s)	69, 299, 421, 432
MspR9I	CCNGG	3 cut(s)	34, 70, 433
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	156
NciI	CCSGG	2 cut(s)	70, 433
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	337, 360, 493
NlaIII	CATG	2 cut(s)	58, 184
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	3 cut(s)	308, 416, 450
NruI	TCGCGA	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	173
NspI	RCATGY	1 cut(s)	184
PciI	ACATGT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 375, 474
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	104, 349
PkrI	GCNGC	4 cut(s)	50, 53, 398, 401
PscI	ACATGT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	32
PspEI	GGTNACC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	149
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PstNI	CAGNNNCTG	2 cut(s)	21, 51
PsuI	RGATCY	2 cut(s)	337, 493
PvuII	CAGCTG	2 cut(s)	51, 399
RruI	TCGCGA	1 cut(s)	156
RsaI	GTAC	4 cut(s)	190, 263, 427, 473
RsaNI	GTAC	4 cut(s)	189, 262, 426, 472
RseI	CAYNNNNRTG	1 cut(s)	372
SatI	GCNGC	4 cut(s)	49, 52, 397, 400
Sau3AI	GATC	3 cut(s)	337, 360, 493
Sau96I	GGNCC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	263
ScrFI	CCNGG	3 cut(s)	34, 70, 433
SduI	GDGCHC	2 cut(s)	28, 298
SetI	ASST	9 cut(s)	53, 62, 154, 247, 308, 346, 401, 431, 489
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	3 cut(s)	32, 68, 431
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	4 cut(s)	87, 266, 356, 371
TaiI	ACGT	1 cut(s)	431
TasI	AATT	1 cut(s)	505
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	104, 349
TscAI	CASTG	2 cut(s)	101, 359
TseFI	GTSAC	3 cut(s)	308, 416, 450
TseI	GCWGC	4 cut(s)	48, 51, 396, 399
Tsp45I	GTSAC	3 cut(s)	308, 416, 450
TspDTI	ATGAA	4 cut(s)	52, 210, 234, 287
TspGWI	ACGGA	2 cut(s)	162, 429
TspRI	CASTG	2 cut(s)	101, 359
VpaK11BI	GGWCC	1 cut(s)	149
XceI	RCATGY	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	341
ZrmI	AGTACT	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.