Rh2CG312600

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005446
Physical Location & Seq
Forward (+)
39489046 .. 39489540
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG312600.1

Sequence Viewer

Length: 354 bp
ATGGGTCGCCTTTTTGCTTATGTGATGATATTTGCACTAATTTGTGGATCGGCCATGGGTCAAGCGTCCAGTTTCTGTGCTCAAGCCTGGAACGAGTTCAGCGACTGCATGAGGTTCATCACCGGGTTATTTTCGCAACCGTCAACGCAGTGCTGTGATTCGGTGAGGAGATTGAACAAGATGGCCAAAAGTAGTGAGAACGGACCTCGCGATATATGTCAATGCATTGAGGACATGTCTCGTACATATGGTATTCCTTTTGTAGCCTCCATCATCCAAGATCTACCCATCATATGCAATGCGCACCTTAGTTTCCCAATCTCTAATCGCATGAACTGCACCATGCTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tryp_alpha_amyl

Protein Analysis

117

Amino Acids

13.01

Weight (kDa)

7.49

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 26 - 113 2.7e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
AccII CGCG 1 cut(s) 210
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 2 cut(s) 51, 183
AfaI GTAC 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 1 cut(s) 351
AluI AGCT 1 cut(s) 351
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 55
AlwNI CAGNNNCTG 2 cut(s) 75, 105
AoxI GGCC 2 cut(s) 51, 183
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 112, 175
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 82
BccI CCATC 3 cut(s) 175, 278, 296
BciT130I CCWGG 1 cut(s) 88
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 243
BglII AGATCT 1 cut(s) 280
BlpI GCTNAGC 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 88, 124
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 2 cut(s) 88, 124
Bpu1102I GCTNAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 53, 185
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 2 cut(s) 53, 185
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 47, 280
Bsp1720I GCTNAGC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 54
Bsp68I TCGCGA 1 cut(s) 210
BspANI GGCC 2 cut(s) 53, 185
BspFNI CGCG 1 cut(s) 210
BspPI GGATC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 47, 280
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 336
BstDEI CTNAG 2 cut(s) 308, 347
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 50, 283
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 2 cut(s) 47, 280
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 86, 122
BstUI CGCG 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 53, 185
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 155
BtuMI TCGCGA 1 cut(s) 210
CaiI CAGNNNCTG 2 cut(s) 75, 105
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 243
CviAII CATG 5 cut(s) 55, 109, 235, 331, 343
CviJI RGCY 5 cut(s) 53, 86, 185, 266, 351
CviKI_1 RGCY 5 cut(s) 53, 86, 185, 266, 351
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 2 cut(s) 308, 347
DpnI GATC 2 cut(s) 49, 282
DpnII GATC 2 cut(s) 47, 280
EaeI YGGCCR 2 cut(s) 51, 183
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 58, 112, 238, 334, 346
FatI CATG 5 cut(s) 54, 108, 234, 330, 342
FauNDI CATATG 2 cut(s) 247, 293
FokI GGATG 1 cut(s) 260
FspAI RTGCGCAY 1 cut(s) 303
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 1 cut(s) 303
HaeIII GGCC 2 cut(s) 53, 185
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 304
Hin1II CATG 5 cut(s) 58, 112, 238, 334, 346
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 112, 175
Hpy166II GTNNAC 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 5 cut(s) 35, 108, 225, 297, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 2 cut(s) 308, 347
Hsp92II CATG 5 cut(s) 58, 112, 238, 334, 346
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 47, 280
LpnPI CCDG 4 cut(s) 73, 82, 100, 136
MalI GATC 2 cut(s) 49, 282
MboI GATC 2 cut(s) 47, 280
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 82
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 185
MnlI CCTC 5 cut(s) 105, 159, 216, 223, 277
Mox20I TGGCCA 1 cut(s) 185
Mph1103I ATGCAT 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 88, 124
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 336
NciI CCSGG 1 cut(s) 124
NcoI CCATGG 1 cut(s) 54
NdeI CATATG 2 cut(s) 247, 293
NdeII GATC 2 cut(s) 47, 280
NlaIII CATG 5 cut(s) 58, 112, 238, 334, 346
NruI TCGCGA 1 cut(s) 210
NsbI TGCGCA 1 cut(s) 303
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 1 cut(s) 238
PciI ACATGT 1 cut(s) 234
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 207
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 158
PscI ACATGT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 2 cut(s) 75, 105
PsuI RGATCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 351
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 47, 280
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 88, 124
SduI GDGCHC 1 cut(s) 82
SetI ASST 4 cut(s) 116, 208, 309, 353
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 86, 122
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 141
TasI AATT 1 cut(s) 39
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 106, 347
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 203
XceI RCATGY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.