Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005446

Physical Location & Seq

Genomic Coordinates Forward (+)

29180170 .. 29183522

Gene Structure 3353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0273100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCAAAATCACCAGAAGAAGAACACCCTCAGAAGGTTTTTGGTTGGGCTGCCAGAGATTCTTCTGGGTCACTTTCCCTCTTTCATTTCTCTAGAAGGGAAAATGCCGATGGTGATGTAACAATAAAAGTCCTCTATTGTGGGGTTTGCCATTCAGACTTGCATTCTGTCAAGAACGAATGGGGGTTCACCAACTATCCTATTGTACCTGGGCATGAAATTGTTGGTGTTGTGACCAAAACTGGGAAAAGTGTGACGAAATTCAAAGAAGGTGATCGTGTAGGAGTTGGGGTTATGGTGGGATCCTGCAACACATGTGAGACTTGCCAGCAGGACTTGGAGAACTATTGCCCGAAAGTGATATTCACCTATAACGCCCTCAATCATGACAAAACTAAAACTTATGGTGGTTATTCTGATATGATTGTTGTTGACCATCGCTTTGTGCTCCGCTTTCCCGATAACTTACCCCCAGATTCTGGCGCTCCACTTCTATGTGCCGGGATCACTGTGTATAGTCCGATGAAGTATTACGGCATGACAGAGCCTGGAAAGCATTTGGGCGTGGCAGGACTAGGTGGACTAGGTCATATTGCTGTCAAAATTGGCAAGGCATTTGGTTTGAAGGTAACTGTCATCAGTACTTCCCCAGCTAAGGAGGATGAGGCTATTAACAGACTTGGGGCTGATTCTTTTGTTGTTTCAACTGACCCTGCACAATTGAAGGCAGCGATGGGTACCATGGATTACATAATTGACACAGTATCTGCAGTTCATGCCCTTGCTCCATTAATTGGTCTACTTAAGCTGAATGGGAAGCTGATTACTGTGGGTTTGCCTAATAAGCCACTGGAGTTGCCTATATTTCCATTGGTTCTGGGGAGGAAGCTCGTTGGTGGAAGCGACGTTGGAGGGATAAAAGAGACGCAGGAGATGCTTGACTTTTGTGCCAAACACAATATTACCTCCGAAATCGAGCTAATTAAAATGGACTACATTAACACAGCTATGGAGCGACTTGCCAAATCAGATGTCAGGTATCGGTTTGTGATCGATGTGGGGAACTCCTCGTCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

359

Amino Acids

38.9

Weight (kDa)

6.6

Isoelectric Point (pI)

26.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 154	5.3e-28	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	194 - 317	1.1e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44265
fragaria_vesca	FvH4_4g18380 FvH4_4g18390 FvH4_6g26560
malus_domestica	MD06G1108000.v1.1 MD06G1108100.v1.1 MD17G1235700.v1.1
prunus_persica	Prupe.2G079300_v2.0.a1 Prupe.3G134200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0127571 RchiOBHm_Chr2g0127591
rosa_laevigata	RLG00000018952 RLG00000018954
rosa_multiflora	Rmu_co8172800.1_g000001 Rmu_sc0004744.1_g000004 Rmu_ssc0000200.1_g000021
rosa_roxburghii	Rroxscaffold_2G00116480 Rroxscaffold_2G00116550
rosa_rugosa	Rorug02G0272700 Rorug02G0273100
rosa_samantha	Rh2AG324700 Rh2AG325100 Rh2BG334000 Rh2BG334400 Rh2CG312200 Rh2CG312400 Rh2CG312600 Rh2DG352200
rosa_wichuraiana	Rw2G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	1 cut(s)	737
AccB7I	CCANNNNNTGG	2 cut(s)	479, 794
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	3 cut(s)	297, 310, 512
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	3 cut(s)	207, 643, 739
AfiI	CCNNNNNNNGG	5 cut(s)	34, 243, 479, 655, 794
AflII	CTTAAG	1 cut(s)	803
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	4 cut(s)	265, 625, 705, 724
AjnI	CCWGG	2 cut(s)	208, 547
AluBI	AGCT	6 cut(s)	653, 808, 820, 889, 979, 1007
AluI	AGCT	6 cut(s)	653, 808, 820, 889, 979, 1007
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	314, 917
AlwI	GGATC	3 cut(s)	297, 310, 512
AlwNI	CAGNNNCTG	3 cut(s)	479, 548, 767
ApeKI	GCWGC	2 cut(s)	50, 728
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	4 cut(s)	425, 457, 1017, 1049
AseI	ATTAAT	1 cut(s)	791
Asp718I	GGTACC	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	5 cut(s)	3, 125, 181, 284, 358
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	37, 740
BccI	CCATC	3 cut(s)	104, 444, 727
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	2 cut(s)	210, 549
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	314, 917
BfaI	CTAG	3 cut(s)	93, 575, 584
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	486
BfrI	CTTAAG	1 cut(s)	803
BisI	GCNGC	2 cut(s)	51, 729
BlsI	GCNGC	2 cut(s)	52, 730
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	3 cut(s)	210, 502, 549
BmiI	GGNNCC	2 cut(s)	304, 739
BmrFI	CCNGG	3 cut(s)	210, 502, 549
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	924
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	872
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	502
Bsa29I	ATCGAT	1 cut(s)	1053
BsaJI	CCNNGG	2 cut(s)	209, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 243, 479, 655, 794
Bse1I	ACTGG	2 cut(s)	247, 855
BseBI	CCWGG	2 cut(s)	210, 549
BseCI	ATCGAT	1 cut(s)	1053
BseDI	CCNNGG	2 cut(s)	209, 741
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	5 cut(s)	34, 243, 479, 655, 794
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	247, 855
BseRI	GAGGAG	1 cut(s)	1057
BseXI	GCAGC	2 cut(s)	37, 740
BseYI	CCCAGC	1 cut(s)	649
BsgI	GTGCAG	1 cut(s)	699
BshNI	GGYRCC	1 cut(s)	737
BshVI	ATCGAT	1 cut(s)	1053
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	5 cut(s)	34, 243, 479, 655, 794
BsmAI	GTCTC	2 cut(s)	314, 917
BsmBI	CGTCTC	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	274, 302, 504, 1050
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	1053
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	304, 739
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	3 cut(s)	297, 310, 512
BspT107I	GGYRCC	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	803
BsrI	ACTGG	2 cut(s)	247, 855
BssECI	CCNNGG	2 cut(s)	209, 741
BssMI	GATC	4 cut(s)	274, 302, 504, 1050
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	210, 549
Bst4CI	ACNGT	4 cut(s)	511, 634, 763, 829
BstAFI	CTTAAG	1 cut(s)	803
BstAPI	GCANNNNNTGC	2 cut(s)	776, 934
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	30, 654, 1074
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	667
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	4 cut(s)	277, 305, 507, 1053
BstMAI	GTCTC	2 cut(s)	314, 917
BstMBI	GATC	4 cut(s)	274, 302, 504, 1050
BstMWI	GCNNNNNNNGC	4 cut(s)	553, 776, 844, 934
BstNI	CCWGG	2 cut(s)	210, 549
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	3 cut(s)	208, 500, 547
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	2 cut(s)	37, 740
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	1053
BsuTUI	ATCGAT	1 cut(s)	1053
BtgI	CCRYGG	1 cut(s)	741
BtgZI	GCGATG	2 cut(s)	422, 746
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	2 cut(s)	507, 848
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	3 cut(s)	479, 548, 767
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	1053
CseI	GACGC	1 cut(s)	934
Csp6I	GTAC	3 cut(s)	206, 642, 738
CspCI	CAANNNNNGTGG	2 cut(s)	837, 872
CviAII	CATG	6 cut(s)	215, 315, 386, 538, 742, 776
CviQI	GTAC	3 cut(s)	206, 642, 738
DdeI	CTNAG	3 cut(s)	30, 654, 1074
DpnI	GATC	4 cut(s)	276, 304, 506, 1052
DpnII	GATC	4 cut(s)	274, 302, 504, 1050
Eco130I	CCWWGG	1 cut(s)	741
EcoRII	CCWGG	2 cut(s)	208, 547
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
FatI	CATG	6 cut(s)	214, 314, 385, 537, 741, 775
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	2 cut(s)	51, 729
FokI	GGATG	1 cut(s)	674
Fsp4HI	GCNGC	2 cut(s)	51, 729
FspBI	CTAG	3 cut(s)	93, 575, 584
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	51, 729
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	872
HaeII	RGCGCY	1 cut(s)	486
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	1 cut(s)	934
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	59, 476, 689
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	5 cut(s)	3, 125, 181, 284, 358
Hpy166II	GTNNAC	4 cut(s)	189, 433, 581, 800
Hpy188I	TCNGA	6 cut(s)	33, 157, 418, 522, 970, 1030
Hpy188III	TCNNGA	4 cut(s)	93, 172, 386, 458
Hpy8I	GTNNAC	4 cut(s)	189, 433, 581, 800
Hpy99I	CGWCG	1 cut(s)	908
HpyAV	CCTTC	5 cut(s)	28, 90, 263, 619, 718
HpyCH4III	ACNGT	4 cut(s)	511, 634, 763, 829
HpyCH4IV	ACGT	1 cut(s)	906
HpyCH4V	TGCA	4 cut(s)	163, 309, 716, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	553, 776, 844, 934
HpyF3I	CTNAG	3 cut(s)	30, 654, 1074
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
HspAI	GCGC	1 cut(s)	483
KpnI	GGTACC	1 cut(s)	741
Kzo9I	GATC	4 cut(s)	274, 302, 504, 1050
LmnI	GCTCC	4 cut(s)	453, 490, 790, 1012
Lsp1109I	GCAGC	2 cut(s)	37, 740
LweI	GCATC	1 cut(s)	924
MaeI	CTAG	3 cut(s)	93, 575, 584
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	5 cut(s)	69, 118, 232, 253, 628
MalI	GATC	4 cut(s)	276, 304, 506, 1052
MboI	GATC	4 cut(s)	274, 302, 504, 1050
MboII	GAAGA	3 cut(s)	29, 32, 54
MfeI	CAATTG	1 cut(s)	719
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	7 cut(s)	219, 260, 603, 719, 753, 792, 981
MmeI	TCCRAC	1 cut(s)	889
MseI	TTAA	5 cut(s)	672, 791, 804, 984, 999
MslI	CAYNNNNRTG	2 cut(s)	493, 1007
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	210, 502, 549
MunI	CAATTG	1 cut(s)	719
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	2 cut(s)	210, 549
MwoI	GCNNNNNNNGC	4 cut(s)	553, 776, 844, 934
NciI	CCSGG	1 cut(s)	502
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	4 cut(s)	274, 302, 504, 1050
NlaIII	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
NlaIV	GGNNCC	2 cut(s)	304, 739
NmuCI	GTSAC	3 cut(s)	69, 232, 253
NspI	RCATGY	1 cut(s)	318
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	314
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	59, 476, 689
PflFI	GACNNNGTC	1 cut(s)	585
PflMI	CCANNNNNTGG	2 cut(s)	479, 794
PkrI	GCNGC	2 cut(s)	52, 730
PscI	ACATGT	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	208, 547
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	2 cut(s)	208, 547
PspN4I	GGNNCC	2 cut(s)	304, 739
PsrI	GAACNNNNNNTAC	2 cut(s)	756, 788
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	3 cut(s)	479, 548, 767
PsuI	RGATCY	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	585
RsaI	GTAC	3 cut(s)	207, 643, 739
RsaNI	GTAC	3 cut(s)	206, 642, 738
RseI	CAYNNNNRTG	2 cut(s)	493, 1007
SaqAI	TTAA	5 cut(s)	672, 791, 804, 984, 999
SatI	GCNGC	2 cut(s)	51, 729
Sau3AI	GATC	4 cut(s)	274, 302, 504, 1050
ScaI	AGTACT	1 cut(s)	643
ScrFI	CCNGG	3 cut(s)	210, 502, 549
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	924
SfcI	CTRYAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	2 cut(s)	493, 1007
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	7 cut(s)	219, 260, 603, 719, 753, 792, 981
SsiI	CCGC	1 cut(s)	451
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	3 cut(s)	93, 575, 584
StyD4I	CCNGG	3 cut(s)	208, 500, 547
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	4 cut(s)	511, 634, 763, 829
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	2 cut(s)	975, 1053
TasI	AATT	7 cut(s)	219, 260, 603, 719, 753, 792, 981
TatI	WGTACW	1 cut(s)	641
TfiI	GAWTC	3 cut(s)	59, 476, 689
Tru1I	TTAA	5 cut(s)	672, 791, 804, 984, 999
Tru9I	TTAA	5 cut(s)	672, 791, 804, 984, 999
TscAI	CASTG	2 cut(s)	514, 855
TseFI	GTSAC	3 cut(s)	69, 232, 253
TseI	GCWGC	2 cut(s)	50, 728
Tsp45I	GTSAC	3 cut(s)	69, 232, 253
TspDTI	ATGAA	4 cut(s)	74, 231, 539, 764
TspRI	CASTG	2 cut(s)	514, 855
Tth111I	GACNNNGTC	1 cut(s)	585
Van91I	CCANNNNNTGG	2 cut(s)	479, 794
Vha464I	CTTAAG	1 cut(s)	803
VspI	ATTAAT	1 cut(s)	791
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	799
XspI	CTAG	3 cut(s)	93, 575, 584
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.