FvH4_4g18390

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005446
Physical Location & Seq
Forward (+)
22285533 .. 22286533
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18390.t1

Sequence Viewer

Length: 423 bp
ATGTATAACATGGTAGCTAGCAATTCATACCATTCCATCATGGATGCTCGTCGACCCTTTGGTTTTGCCTGTGCAACACTCGTTGTGCTTGTTCCTGTGCTGCTGCTTTGTTCATCAACATCAGTGAAGGCTGAGACGGAGGAGGATTACTGTATGAATGTGATTCTTGATTTTAGCCCTTGCGTAAGTTTTGTAGCGGGTTTTCAACCATATGTGATAGATGCTTGCTGTGTAAACCTACTATATTTGAATCGTTTAGCAGAACGAGATAATGGTCCGCGGAGGATATGTGAGTGCATTAAGGACTATTCTAATTACTCCGATCTTCCTTACAATGCCACCCGAATTCAACAGCTGTTTCCAATTTGCGAGATCCATAATAAGTTTCCCATTTCTGATAGCATGGACTGCTCCAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.85

Weight (kDa)

5.01

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 280
AciI CCGC 3 cut(s) 197, 278, 280
AclWI GGATC 1 cut(s) 367
AcsI RAATTY 1 cut(s) 345
AgsI TTSAA 3 cut(s) 206, 250, 350
AluBI AGCT 2 cut(s) 17, 355
AluI AGCT 2 cut(s) 17, 355
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 367
ApeKI GCWGC 2 cut(s) 100, 103
ApoI RAATTY 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 87, 90
BccI CCATC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 101, 104
BlsI GCNGC 2 cut(s) 102, 105
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmsI GCATC 2 cut(s) 34, 211
BmtI GCTAGC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 87, 90
Bsh1236I CGCG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 322, 372
BspACI CCGC 3 cut(s) 197, 278, 280
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 280
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 2 cut(s) 322, 372
Bst4CI ACNGT 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 19, 226
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 280
BstKTI GATC 2 cut(s) 325, 375
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 322, 372
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 87, 90
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 19, 226
Cfr13I GGNCC 1 cut(s) 275
Cfr42I CCGCGG 1 cut(s) 281
CviAII CATG 3 cut(s) 10, 40, 403
CviJI RGCY 4 cut(s) 17, 131, 177, 355
CviKI_1 RGCY 4 cut(s) 17, 131, 177, 355
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 324, 374
DpnII GATC 2 cut(s) 322, 372
Eco47I GGWCC 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 13, 43, 406
FatI CATG 3 cut(s) 9, 39, 402
FauI CCCGC 1 cut(s) 190
FauNDI CATATG 1 cut(s) 211
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 101, 104
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 101, 104
FspBI CTAG 1 cut(s) 18
GluI GCNGC 2 cut(s) 101, 104
Hin1II CATG 3 cut(s) 13, 43, 406
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 2 cut(s) 163, 250
Hpy166II GTNNAC 2 cut(s) 53, 235
Hpy188I TCNGA 2 cut(s) 322, 397
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 2 cut(s) 53, 235
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 74, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 3 cut(s) 13, 43, 406
KspI CCGCGG 1 cut(s) 281
Kzo9I GATC 2 cut(s) 322, 372
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 2 cut(s) 82, 108
Lsp1109I GCAGC 2 cut(s) 87, 90
LweI GCATC 2 cut(s) 34, 211
MaeI CTAG 1 cut(s) 18
MalI GATC 2 cut(s) 324, 374
MboI GATC 2 cut(s) 322, 372
MboII GAAGA 1 cut(s) 317
MflI RGATCY 1 cut(s) 372
MluCI AATT 4 cut(s) 22, 313, 345, 363
MnlI CCTC 3 cut(s) 133, 136, 276
MseI TTAA 2 cut(s) 300, 421
MspA1I CMGCKG 2 cut(s) 280, 355
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 408
NdeI CATATG 1 cut(s) 211
NdeII GATC 2 cut(s) 322, 372
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 13, 43, 406
PfeI GAWTC 2 cut(s) 163, 250
PkrI GCNGC 2 cut(s) 102, 105
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 355
SacII CCGCGG 1 cut(s) 281
SalI GTCGAC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 300, 421
SatI GCNGC 2 cut(s) 101, 104
Sau3AI GATC 2 cut(s) 322, 372
Sau96I GGNCC 1 cut(s) 275
SetI ASST 3 cut(s) 19, 240, 357
SfaNI GCATC 2 cut(s) 34, 211
Sfr303I CCGCGG 1 cut(s) 281
SgrBI CCGCGG 1 cut(s) 281
SinI GGWCC 1 cut(s) 275
Sse9I AATT 4 cut(s) 22, 313, 345, 363
SsiI CCGC 3 cut(s) 197, 278, 280
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 52
TasI AATT 4 cut(s) 22, 313, 345, 363
TfiI GAWTC 2 cut(s) 163, 250
Tru1I TTAA 2 cut(s) 300, 421
Tru9I TTAA 2 cut(s) 300, 421
TscAI CASTG 1 cut(s) 129
TseI GCWGC 2 cut(s) 100, 103
TspDTI ATGAA 3 cut(s) 15, 102, 170
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.