FvH4_6g26560

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005446
Physical Location & Seq
Forward (+)
20291323 .. 20292121
799 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26560.t1

Sequence Viewer

Length: 378 bp
ATGCATATCATGGTTGTTCGTCCTTTTGGTTTAGCATGTGTAACAGTTGTTCCTGTGTTGCTGCTTTGTTCTGCATTAGTAAAAGCTCAGACGAACGATTACTGTTCGACTGTATTTGCGGATTTTAGCACCTGTCTGAGTTATGTTGGGGGGTTATCTTCTGAACCGATGGAGGGTTGCTGTGATTCCCTAGTAGATTTGAATCATTTAGCACATCAAGAGCAGACTGGTCCGCGTAGGATATGTGAATGCATTAAGAACTCCTCTCATTGGACCAAAATTCGTTTCAATGCCTCCCGAATTTTGGAGCTTCCTGGATTATGCATGCTCCGTCTTAGTTTTCCCATTTCTGATAGCATGAATTGCTCCAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.77

Weight (kDa)

6.86

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 35 - 122 1.3e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 235
AciI CCGC 2 cut(s) 119, 233
AcsI RAATTY 2 cut(s) 279, 300
AfiI CCNNNNNNNGG 3 cut(s) 173, 270, 304
AgsI TTSAA 2 cut(s) 202, 289
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 2 cut(s) 86, 310
AluI AGCT 2 cut(s) 86, 310
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 2 cut(s) 279, 300
AspS9I GGNCC 2 cut(s) 230, 273
AvaII GGWCC 2 cut(s) 230, 273
BbvI GCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 315
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 230, 273
BmgT120I GGNCC 2 cut(s) 230, 273
BmrFI CCNGG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 270, 304
Bse1I ACTGG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 369
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 173, 270, 304
BseMII CTCAG 2 cut(s) 101, 128
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 235
BslI CCNNNNNNNGG 3 cut(s) 173, 270, 304
BsmI GAATGC 1 cut(s) 254
BspACI CCGC 2 cut(s) 119, 233
BspCNI CTCAG 2 cut(s) 100, 129
BspFNI CGCG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 46, 104, 112
BstAPI GCANNNNNTGC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 87, 137, 335
BstFNI CGCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 2 cut(s) 39, 328
BstSCI CCNGG 1 cut(s) 313
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 230, 273
CviAII CATG 4 cut(s) 10, 36, 325, 358
CviJI RGCY 2 cut(s) 86, 310
CviKI_1 RGCY 2 cut(s) 86, 310
DdeI CTNAG 3 cut(s) 87, 137, 335
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 230, 273
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 3 cut(s) 6, 254, 326
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 4 cut(s) 13, 39, 328, 361
FaiI YATR 8 cut(s) 6, 11, 37, 144, 244, 322, 326, 359
FatI CATG 4 cut(s) 9, 35, 324, 357
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 62
Hin1II CATG 4 cut(s) 13, 39, 328, 361
HinfI GANTC 2 cut(s) 185, 202
Hpy188I TCNGA 4 cut(s) 90, 138, 163, 352
Hpy188III TCNNGA 2 cut(s) 218, 297
HpyCH4III ACNGT 3 cut(s) 46, 104, 112
HpyCH4V TGCA 4 cut(s) 4, 74, 252, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 3 cut(s) 87, 137, 335
Hsp92II CATG 4 cut(s) 13, 39, 328, 361
LmnI GCTCC 3 cut(s) 307, 333, 371
LpnPI CCDG 5 cut(s) 66, 145, 213, 300, 327
Lsp1109I GCAGC 1 cut(s) 48
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 1 cut(s) 150
MluCI AATT 3 cut(s) 279, 300, 361
MnlI CCTC 3 cut(s) 166, 274, 304
Mph1103I ATGCAT 3 cut(s) 6, 254, 326
MseI TTAA 2 cut(s) 255, 376
MspR9I CCNGG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 363
NlaIII CATG 4 cut(s) 13, 39, 328, 361
NsiI ATGCAT 3 cut(s) 6, 254, 326
NspI RCATGY 2 cut(s) 39, 328
PaeI GCATGC 1 cut(s) 328
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 185, 202
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspPI GGNCC 2 cut(s) 230, 273
PsrI GAACNNNNNNTAC 2 cut(s) 33, 65
SaqAI TTAA 2 cut(s) 255, 376
SatI GCNGC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 230, 273
ScrFI CCNGG 1 cut(s) 315
SetI ASST 4 cut(s) 88, 134, 312, 375
SinI GGWCC 2 cut(s) 230, 273
SphI GCATGC 1 cut(s) 328
Sse9I AATT 3 cut(s) 279, 300, 361
SsiI CCGC 2 cut(s) 119, 233
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 3 cut(s) 46, 104, 112
TaqI TCGA 1 cut(s) 107
TasI AATT 3 cut(s) 279, 300, 361
TfiI GAWTC 2 cut(s) 185, 202
Tru1I TTAA 2 cut(s) 255, 376
Tru9I TTAA 2 cut(s) 255, 376
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 374
TspGWI ACGGA 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 230, 273
XapI RAATTY 2 cut(s) 279, 300
XceI RCATGY 2 cut(s) 39, 328
XspI CTAG 1 cut(s) 191
Zsp2I ATGCAT 3 cut(s) 6, 254, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.