Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005446

Physical Location & Seq

Genomic Coordinates Forward (+)

24763599 .. 24763970

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1108100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTCTCCCGTTGGGTTTTTGTGCGATGACCATTTTTCTCTTAGTTTGTGGATTCGCCAATGCTCAAGCAAGATCGCATATCTACGAGCAAGCTTGGCATGAGTTCAGCAATTGCTTCGGTTTTTCTACGGGGGTAGAATCTGATGTATCGATTGAGTGTTGCACCTCTGTCACGACATTGAACAGGATGGCCAAAAAATTTAAGAATGCACCGAGTGTTATATGCCACTGCATCGAGGACATGGCTTGGGCATATCAAACTCCTTACGTAGCCTCCCGTATCCCAGACATTCCCATTCAATGTAATGAACATCTCAGTTTCCCTATTTCTAACAACATGGATTGCAATAAGTATTACACATTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

124

Amino Acids

13.87

Weight (kDa)

5.69

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44265
fragaria_vesca	FvH4_4g18380 FvH4_4g18390 FvH4_6g26560
malus_domestica	MD06G1108000.v1.1 MD06G1108100.v1.1 MD17G1235700.v1.1
prunus_persica	Prupe.2G079300_v2.0.a1 Prupe.3G134200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0127571 RchiOBHm_Chr2g0127591
rosa_laevigata	RLG00000018952 RLG00000018954
rosa_multiflora	Rmu_co8172800.1_g000001 Rmu_sc0004744.1_g000004 Rmu_ssc0000200.1_g000021
rosa_roxburghii	Rroxscaffold_2G00116480 Rroxscaffold_2G00116550
rosa_rugosa	Rorug02G0272700 Rorug02G0273100
rosa_samantha	Rh2AG324700 Rh2AG325100 Rh2BG334000 Rh2BG334400 Rh2CG312200 Rh2CG312400 Rh2CG312600 Rh2DG352200
rosa_wichuraiana	Rw2G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	184, 302
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AoxI	GGCC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	194
BccI	CCATC	1 cut(s)	184
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciVI	GTATCC	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
BseCI	ATCGAT	1 cut(s)	152
BseGI	GGATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	330
BspDI	ATCGAT	1 cut(s)	152
BssMI	GATC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	43, 317
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstSNI	TACGTA	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	152
CviAII	CATG	3 cut(s)	101, 244, 340
CviJI	RGCY	5 cut(s)	5, 95, 194, 248, 275
CviKI_1	RGCY	5 cut(s)	5, 95, 194, 248, 275
DdeI	CTNAG	2 cut(s)	43, 317
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
DraIII	CACNNNGTG	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	192
Eco105I	TACGTA	1 cut(s)	271
FaeI	CATG	3 cut(s)	104, 247, 343
FaiI	YATR	7 cut(s)	81, 102, 224, 226, 245, 256, 341
FatI	CATG	3 cut(s)	100, 243, 339
FokI	GGATG	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	104, 247, 343
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	54, 140
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	165, 212, 234, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	43, 317
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	104, 247, 343
Kzo9I	GATC	1 cut(s)	74
LpnPI	CCDG	2 cut(s)	172, 300
LweI	GCATC	1 cut(s)	243
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	2 cut(s)	112, 200
MluNI	TGGCCA	1 cut(s)	194
MnlI	CCTC	3 cut(s)	178, 232, 286
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	194
MunI	CAATTG	1 cut(s)	112
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	3 cut(s)	104, 247, 343
NmuCI	GTSAC	1 cut(s)	172
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	54, 140
Ppu21I	YACGTR	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	74
SetI	ASST	3 cut(s)	97, 170, 273
SfaNI	GCATC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
SnaBI	TACGTA	1 cut(s)	271
Sse9I	AATT	2 cut(s)	112, 200
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	152, 237
TasI	AATT	2 cut(s)	112, 200
TfiI	GAWTC	2 cut(s)	54, 140
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.