Prupe.3G134200_v2.0.a1

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0005446
Physical Location & Seq
Reverse (-)
14046230 .. 14047313
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G134200.1

Sequence Viewer

Length: 360 bp
ATGGCTTACCTTTTTGCTTATGTGAGCATCTTTCTCTTAGTTTGTGGATCAGCCAATGCTCAACAAGCATCCCAGTTCTGTGCTTATGCCTGGCATGAATTCAGCAATTGCCTGAGGTTCCTTACAGGCTTATACCCTCAATATCCATCACGTGAGTGTTGTGACGCGGTGAGGACATTGAACTTGGTGGCCCAAGGTGATGAGTTAGCACCTGGGAATATATGTCAATGCATTCAGGACATGGCTTCTGTATATCGCATTCCTTTTGTAGCCTCTCTCATCCAAGATCTTCCCATAAAATGCAATGCTCATCTTAGTTTCCCTATTTCTAATAGCATGGATTGCACACACCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tryp_alpha_amyl

Protein Analysis

120

Amino Acids

13.25

Weight (kDa)

5.35

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 98
AcvI CACGTG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 2 cut(s) 89, 211
AleI CACNNNNGTG 1 cut(s) 154
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 189
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 181, 209
AxyI CCTNAGG 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 152
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 2 cut(s) 91, 213
BglII AGATCT 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 91, 213
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 2 cut(s) 91, 213
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 2 cut(s) 36, 77
BmuI ACTGGG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 193, 212
Bse1I ACTGG 1 cut(s) 73
Bse21I CCTNAGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 91, 213
BseDI CCNNGG 2 cut(s) 193, 212
BseGI GGATG 2 cut(s) 68, 279
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 191
BsmI GAATGC 2 cut(s) 231, 258
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 47, 286
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 105
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 193, 212
BssMI GATC 2 cut(s) 47, 286
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 2 cut(s) 91, 213
BstAPI GCANNNNNTGC 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 37, 113, 314
BstF5I GGATG 2 cut(s) 68, 279
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 2 cut(s) 50, 289
BstMBI GATC 2 cut(s) 47, 286
BstMWI GCNNNNNNNGC 2 cut(s) 65, 342
BstNI CCWGG 2 cut(s) 91, 213
BstSCI CCNGG 2 cut(s) 89, 211
BstUI CGCG 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
Bsu36I CCTNAGG 1 cut(s) 113
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 2 cut(s) 68, 279
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 173
CviAII CATG 3 cut(s) 95, 241, 337
CviJI RGCY 6 cut(s) 5, 53, 129, 191, 245, 272
CviKI_1 RGCY 6 cut(s) 5, 53, 129, 191, 245, 272
DdeI CTNAG 3 cut(s) 37, 113, 314
DpnI GATC 2 cut(s) 49, 288
DpnII GATC 2 cut(s) 47, 286
Eco130I CCWWGG 1 cut(s) 193
Eco72I CACGTG 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 89, 211
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 98, 244, 340
FatI CATG 3 cut(s) 94, 240, 336
FokI GGATG 2 cut(s) 55, 266
HaeIII GGCC 1 cut(s) 191
HgaI GACGC 1 cut(s) 173
Hin1II CATG 3 cut(s) 98, 244, 340
HphI GGTGA 2 cut(s) 181, 209
Hpy188III TCNNGA 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 231, 303, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 342
HpyF3I CTNAG 3 cut(s) 37, 113, 314
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 3 cut(s) 98, 244, 340
Kzo9I GATC 2 cut(s) 47, 286
LpnPI CCDG 8 cut(s) 76, 86, 103, 111, 125, 198, 221, 225
LweI GCATC 2 cut(s) 36, 77
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 49, 288
MboI GATC 2 cut(s) 47, 286
MboII GAAGA 1 cut(s) 281
MfeI CAATTG 2 cut(s) 106, 355
MflI RGATCY 1 cut(s) 286
MluCI AATT 3 cut(s) 98, 106, 355
MnlI CCTC 4 cut(s) 108, 147, 165, 283
Mph1103I ATGCAT 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 91, 213
MunI CAATTG 2 cut(s) 106, 355
Mva1269I GAATGC 2 cut(s) 231, 258
MvaI CCWGG 2 cut(s) 91, 213
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 65, 342
NdeII GATC 2 cut(s) 47, 286
NlaIII CATG 3 cut(s) 98, 244, 340
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 154
PctI GAATGC 2 cut(s) 231, 258
PmaCI CACGTG 1 cut(s) 152
PmlI CACGTG 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 89, 211
PspCI CACGTG 1 cut(s) 152
PspGI CCWGG 2 cut(s) 89, 211
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 154
Sau3AI GATC 2 cut(s) 47, 286
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 91, 213
SetI ASST 6 cut(s) 12, 119, 154, 199, 214, 354
SfaNI GCATC 2 cut(s) 36, 77
SmiMI CAYNNNNRTG 1 cut(s) 154
Sse9I AATT 3 cut(s) 98, 106, 355
SsiI CCGC 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 89, 211
StyI CCWWGG 1 cut(s) 193
TaiI ACGT 1 cut(s) 154
TasI AATT 3 cut(s) 98, 106, 355
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 111
XapI RAATTY 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.