Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8172800.1

Orthogroup ID

OG0005446

Physical Location & Seq

Genomic Coordinates Forward (+)

293 .. 640

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8172800.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgggtcgcctttttgcttatgtgatgatttttgcactaatttgtggatcggccatgggtcaagcgtccagtttctgtgctcaagcctggaacgagttcagcaactgcatgaggttcatcaccgggttattttcgcaaccgtcaacgcagtgctgtgattcggtgaggagattgaacaagatggccaaaagtagtgagaacggacctcgcgatatatgtcaatgcattgaggacatgtctcgtacatatggtattccttttgtagcctccatcatccaagatctacccatcatatgcaatgcgcaccttagtttcccaatctctaatcgcatgaactgcaccatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

115

Amino Acids

12.81

Weight (kDa)

8.11

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44265
fragaria_vesca	FvH4_4g18380 FvH4_4g18390 FvH4_6g26560
malus_domestica	MD06G1108000.v1.1 MD06G1108100.v1.1 MD17G1235700.v1.1
prunus_persica	Prupe.2G079300_v2.0.a1 Prupe.3G134200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0127571 RchiOBHm_Chr2g0127591
rosa_laevigata	RLG00000018952 RLG00000018954
rosa_multiflora	Rmu_co8172800.1_g000001 Rmu_sc0004744.1_g000004 Rmu_ssc0000200.1_g000021
rosa_roxburghii	Rroxscaffold_2G00116480 Rroxscaffold_2G00116550
rosa_rugosa	Rorug02G0272700 Rorug02G0273100
rosa_samantha	Rh2AG324700 Rh2AG325100 Rh2BG334000 Rh2BG334400 Rh2CG312200 Rh2CG312400 Rh2CG312600 Rh2DG352200
rosa_wichuraiana	Rw2G026370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
AccII	CGCG	1 cut(s)	210
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	2 cut(s)	51, 183
AfaI	GTAC	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	55
AlwNI	CAGNNNCTG	2 cut(s)	75, 105
AoxI	GGCC	2 cut(s)	51, 183
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	112, 175
AvaII	GGWCC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	82
BccI	CCATC	3 cut(s)	175, 278, 296
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	243
BglII	AGATCT	1 cut(s)	280
Bme1390I	CCNGG	2 cut(s)	88, 124
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmrFI	CCNGG	2 cut(s)	88, 124
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	53, 185
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	53, 185
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	47, 280
Bsp19I	CCATGG	1 cut(s)	54
Bsp68I	TCGCGA	1 cut(s)	210
BspANI	GGCC	2 cut(s)	53, 185
BspFNI	CGCG	1 cut(s)	210
BspPI	GGATC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	47, 280
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	50, 283
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	2 cut(s)	47, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	86, 122
BstUI	CGCG	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	53, 185
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	273
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
BtuMI	TCGCGA	1 cut(s)	210
CaiI	CAGNNNCTG	2 cut(s)	75, 105
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	5 cut(s)	55, 109, 235, 331, 343
CviJI	RGCY	4 cut(s)	53, 86, 185, 266
CviKI_1	RGCY	4 cut(s)	53, 86, 185, 266
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	49, 282
DpnII	GATC	2 cut(s)	47, 280
EaeI	YGGCCR	2 cut(s)	51, 183
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	5 cut(s)	58, 112, 238, 334, 346
FatI	CATG	5 cut(s)	54, 108, 234, 330, 342
FauNDI	CATATG	2 cut(s)	247, 293
FokI	GGATG	1 cut(s)	260
FspAI	RTGCGCAY	1 cut(s)	303
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	53, 185
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	58, 112, 238, 334, 346
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	112, 175
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	35, 108, 225, 297, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	5 cut(s)	58, 112, 238, 334, 346
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	47, 280
LpnPI	CCDG	4 cut(s)	73, 82, 100, 136
MalI	GATC	2 cut(s)	49, 282
MboI	GATC	2 cut(s)	47, 280
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	185
MnlI	CCTC	5 cut(s)	105, 159, 216, 223, 277
Mox20I	TGGCCA	1 cut(s)	185
Mph1103I	ATGCAT	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	88, 124
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	2 cut(s)	247, 293
NdeII	GATC	2 cut(s)	47, 280
NlaIII	CATG	5 cut(s)	58, 112, 238, 334, 346
NruI	TCGCGA	1 cut(s)	210
NsbI	TGCGCA	1 cut(s)	303
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	238
PciI	ACATGT	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	203
PstNI	CAGNNNCTG	2 cut(s)	75, 105
PsuI	RGATCY	1 cut(s)	280
RruI	TCGCGA	1 cut(s)	210
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	47, 280
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	88, 124
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	3 cut(s)	116, 208, 309
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	86, 122
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	141
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	106, 347
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	203
XceI	RCATGY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.