Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Reverse (-)

23511889 .. 23513045

Gene Structure 1157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGACGCAACTGATAATTTCAACTCTGATAATCTGTTAGGGACATGTGACTTCTCTTCAGTATTTAAAGGCAGATTGGAGGATTGGAGTACAATGTCTGTGAAGAAGGTGCAGAAGAACAAACATGGTAAGTTAGACGTCGCTAGGGCTTTGAAAGCCTGTAAATATGTGATTGTAGTACTCAATGAAACGAAACATACAATTGTGGTTGCGCTACTTAGATATTACGAAGATGATGAGCAACACCTCATGCTTGTATATGAGTATATGTCTCAAGGGACACTTGTTGATCATTTATTTAAAAGGACAAATGAAGGCGGCCAACTTTTCAATTGGGGCAGGAGGCTTAAGATTTCACACGATATTGCAAGAGCGAGCTTGGCAAGTCTAGCTTATCTTATCAATTTTGATGTTTCACACAACAATTTGTATGGAGAAGTGCCTAAGTTTGCTACTGCTACTCAAGTAAGGTTGAACATGGATGATAATCCTAGAGTCATTAGGATTGCTCCAACACCAACACCAACACCACCACAAGCACAACCATCTCCACATTTACCTCCGCACACCGTTGTTGATGAGAGTTCGTCATTGCCCACAATTGTAGTTATTGGCCTTATGTTGGGAGGCAAATTGGAGGATGGAAATACAATGTCTGTGAAGAAGTTGCAGAAGAACAAACATGGTAAGTTGGATGCCACTAGGGCTTTGAAAGCCTTTAAATATGAGATTGTAGTGCACAATGAAACAAAACGTACAAATGTGGTTGCGCTACTTGGATATTACGAAGATGATGAGCAACACCTCAAGCTTGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

274

Amino Acids

30.83

Weight (kDa)

8.65

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 140	3.2e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 143	6.4e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AciI	CCGC	2 cut(s)	318, 563
AcoI	YGGCCR	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	3 cut(s)	91, 180, 757
AfiI	CCNNNNNNNGG	1 cut(s)	622
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	22, 154, 331, 475, 712
AluBI	AGCT	3 cut(s)	378, 392, 811
AluI	AGCT	3 cut(s)	378, 392, 811
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	1 cut(s)	276
Alw44I	GTGCAC	1 cut(s)	737
AoxI	GGCC	2 cut(s)	319, 613
ApaLI	GTGCAC	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	214, 772
BaeGI	GKGCMC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	741
BccI	CCATC	2 cut(s)	553, 635
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	4 cut(s)	144, 389, 492, 702
BfrI	CTTAAG	1 cut(s)	347
BglI	GCCNNNNNGGC	1 cut(s)	704
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
BmcAI	AGTACT	1 cut(s)	180
BmsI	GCATC	1 cut(s)	685
BpuEI	CTTGAG	3 cut(s)	258, 447, 791
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	590
Bse8I	GATNNNNATC	1 cut(s)	486
BseGI	GGATG	3 cut(s)	487, 646, 700
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMI	GCAATG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	741
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	321, 615
BsiHKAI	GWGCWC	1 cut(s)	741
BslFI	GGGAC	2 cut(s)	55, 292
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	55, 292
BsnI	GGCC	2 cut(s)	321, 615
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	2 cut(s)	318, 563
BspANI	GGCC	2 cut(s)	321, 615
BspTI	CTTAAG	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	590
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	218, 444
BstF5I	GGATG	3 cut(s)	487, 646, 700
BstHHI	GCGC	2 cut(s)	214, 772
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 380, 389, 704, 713
BstNSI	RCATGY	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	321, 615
BtsCI	GGATG	3 cut(s)	487, 646, 700
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	2 cut(s)	214, 772
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	3 cut(s)	90, 179, 756
CviAII	CATG	5 cut(s)	45, 125, 250, 478, 683
CviQI	GTAC	3 cut(s)	90, 179, 756
DdeI	CTNAG	2 cut(s)	218, 444
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraI	TTTAAA	3 cut(s)	67, 301, 721
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	42
FaeI	CATG	5 cut(s)	48, 128, 253, 481, 686
FalI	AAGNNNNNCTT	4 cut(s)	267, 299, 376, 408
FaqI	GGGAC	2 cut(s)	55, 292
FatI	CATG	5 cut(s)	44, 124, 249, 477, 682
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	3 cut(s)	494, 653, 707
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	4 cut(s)	144, 389, 492, 702
GlaI	GCGC	2 cut(s)	213, 771
GluI	GCNGC	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	321, 615
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	214, 772
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	48, 128, 253, 481, 686
Hin6I	GCGC	2 cut(s)	212, 770
HinP1I	GCGC	2 cut(s)	212, 770
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	1 cut(s)	495
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	739
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	100, 308
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	2 cut(s)	138, 754
HpyCH4V	TGCA	4 cut(s)	112, 368, 670, 739
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 380, 389, 704, 713
HpyF3I	CTNAG	2 cut(s)	218, 444
HpySE526I	ACGT	2 cut(s)	138, 754
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	48, 128, 253, 481, 686
HspAI	GCGC	2 cut(s)	212, 770
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	2 cut(s)	172, 325
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	4 cut(s)	144, 389, 492, 702
MaeII	ACGT	2 cut(s)	138, 754
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	7 cut(s)	48, 115, 127, 242, 673, 685, 800
MfeI	CAATTG	3 cut(s)	201, 331, 600
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	7 cut(s)	16, 201, 331, 403, 424, 600, 632
MlyI	GAGTC	1 cut(s)	504
MmeI	TCCRAC	2 cut(s)	536, 672
MnlI	CCTC	7 cut(s)	73, 257, 336, 570, 620, 631, 815
MseI	TTAA	4 cut(s)	66, 300, 348, 720
MspCI	CTTAAG	1 cut(s)	347
MunI	CAATTG	3 cut(s)	201, 331, 600
MwoI	GCNNNNNNNGC	5 cut(s)	155, 380, 389, 704, 713
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	5 cut(s)	48, 128, 253, 481, 686
NmuCI	GTSAC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	48
PciI	ACATGT	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PscI	ACATGT	1 cut(s)	44
RsaI	GTAC	3 cut(s)	91, 180, 757
RsaNI	GTAC	3 cut(s)	90, 179, 756
SaqAI	TTAA	4 cut(s)	66, 300, 348, 720
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	1 cut(s)	289
ScaI	AGTACT	1 cut(s)	180
SchI	GAGTC	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	741
SfaNI	GCATC	1 cut(s)	685
SmlI	CTYRAG	4 cut(s)	273, 347, 462, 806
SmoI	CTYRAG	4 cut(s)	273, 347, 462, 806
Sse9I	AATT	7 cut(s)	16, 201, 331, 403, 424, 600, 632
SsiI	CCGC	2 cut(s)	318, 563
SspMI	CTAG	4 cut(s)	144, 389, 492, 702
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	2 cut(s)	141, 757
TasI	AATT	7 cut(s)	16, 201, 331, 403, 424, 600, 632
TatI	WGTACW	2 cut(s)	89, 178
TauI	GCSGC	1 cut(s)	321
Tru1I	TTAA	4 cut(s)	66, 300, 348, 720
Tru9I	TTAA	4 cut(s)	66, 300, 348, 720
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	201, 327, 759
Vha464I	CTTAAG	1 cut(s)	347
VneI	GTGCAC	1 cut(s)	737
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	4 cut(s)	144, 389, 492, 702
ZraI	GACGTC	1 cut(s)	139
ZrmI	AGTACT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.