Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Reverse (-)

23521747 .. 23524760

Gene Structure 3014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGGCTGCCTCATTTGAGGTGGTCTACTTCTTGTTCAAAAGCAAGCTAGAGAATTCCAATGGTCAAGGAATTAGATTTGGTGGTGGAGGAGTTATCCAATATTCTCTGCAAGTGTTGACAGACGGAACTTATAATTTCAACCCTGATAATCTGTTAGGGACAAGTGGCTTCTCTTCAGTATTTAAAGACAGATTGGAGGATGAGAGTATGATGGATGTGAAGAAGATGCAGAAGAACAAACATGATAAGTTGAACGCCGCTAGGGTTTTGAAAGCCTTTAAATATGCGATTGTAGTGTTTAATGAAACGAAATACACAAATGTGGTTACGCTACTTGGATATTCCGAAGATGATGAGCAACACCTCATGCTAGTATACGAGTATATGTTTCAAGGGACACTTGCAGAACATTTGTTTAAAAGGAGAGATAAAGGCGCAAACTTCTCGATAGATATTGCAAGAGCGGTTGAACACATCCACAAATTCGCTATTCACAAAGTTGTCCATAGAGACTTGAAACCCACCAATATGTTGATTGGAGATGATTTTACTGCAAAAGGTTTTGAAGAACACATCCACAAATTCGCTATTCACAAAGTTGTCCATAGAGACTTGAAGCCCACCAATATGTTGATTGGAGATGATTTTACTGCCAAAGTTGCCGACTTTGGTTTTGTTCATATCTTTGCCTTAATACCGAAGAGCTTGGCAAGTCTAACTTATCTCAGCAATTTTGATGTTTCAGGCAACAATTTGTCTGGAGAAGTGCCTAAGATTGCTGCTCAAGTAAAGGTGAACGTGGATGATAATTCTAGACTCATTAGAACTGCTCCAACACCACCACAAGCACAGTCATCTCCACATTTCACTCCGCACATCGTTGTTAATGAGAGTTCGGCATTGCCCACACTCGTAATTATTGACCTTATGTTGGGATGTATTTTGTGTGTGGTTGCTTCATTTGGGGTGGTCTATTTCGTGTTTAAAAGGAAGCTAGGTAACTCTAATGATCCAGAAATTAGATATGGTGGTGGAGAAGTTATCCATTATTCTCTGCAAGTGTTGACGGACGCAACTGATAATTTCTACTCTGATAATCTGTTAGAGACATGTGGTATCTCTTCAATATTTAAAGGCAGATTCGATGATGAGAGTACAATGTCTTTGAAGAAGATGCAAAAGAATAAACATGGAAAATTGGACGCTGCTAGGGCTTTGAAAGTCTTTAAATATGAGATTGGGACACTTGCAGAACATTTGTTTAAAAGGAGAGATGAAGGCGGCCAACTTCTCGATTGGGGTAGGAGGCTTACGATTGCACTAGATATTGCAAGAGCGGTTGAACACATCCACAAATTTGCTATTGAAAAAGTTGTCCATAGAGACTTGAAACCCACCAATATTTTGTTTGGAGATGATTTTACTGCCAAAGTTGCCGGCTTTGGTTTTGTTCATATATTTCCCTCAGTACCAAAGAGCTTGGCAAGTTTAGTTGATCTTAGAAATTTTGATGTTTCAAACAACAATTTGTCTGGAGAAGTGTCTAAGTTTGCTGCTCAAGTAAGGGTGAACGTGGATGATAATCCTAGACTCATTAGGACTGCTCCAACACCACCACAAACACAGTCATCTCCACATTTACCTCCGCACACCATTGTTGATGAGAGTTCGTCATTACCCACAATGATTGGAGGATGTGAGTACAATGGCTATGAAGAAGATGTAGAAGAGCAAACATGGAGGCTTACAATTGCACTAGATATTGCAAGAGCGGTTGAACACATCCATAAATTCGCTATTCACAAAGTTGTCCATAGAGACTTGAAGCCCACCAATATATTGATTGGAGATGATTTTACTGCCAAAGTTGCCGACTTTGGTTTTGTTCATATCTTTGCCTTAATACCGAAGAACTTGGCAAGTCTAACTTATCTCAGCAATTTTGATGTTTCACACAACAATTTGTCTGGAGACGTGCCTCTTAAGGTGGTCTACTTCTTGTTCAAAAGGAAGCTAGAGAACTCTAATGGTCAAGGAATTAGATTTGGTGGTGGAGGAGTTATCCAATATTCTCTGCAAATGTTGACGGACAGAACTGATAATTTCAACCCTGATAATCTGTTAGGGACAAATGGCTTCTCTTCAGTATTTAAAGACAGATTAGAGGATGAGAGTACAGTGGATTTGAAGACGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

733

Amino Acids

81.93

Weight (kDa)

6.66

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	49 - 180	1.6e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 186	3.5e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	190 - 229	1.4e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	412 - 484	3.5e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	438 - 490	2.1e-08	Protein kinase domain
Pkinase	PF00069	575 - 632	1.1e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	578 - 629	1e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AccBSI	CCGCTC	3 cut(s)	464, 1337, 1772
AccI	GTMKAC	3 cut(s)	24, 375, 1992
AciI	CCGC	7 cut(s)	258, 464, 872, 1281, 1337, 1646, 1772
AclWI	GGATC	1 cut(s)	1004
AcoI	YGGCCR	1 cut(s)	1282
AcsI	RAATTY	6 cut(s)	52, 482, 581, 1355, 1504, 1790
AcuI	CTGAAG	2 cut(s)	159, 2127
AfaI	GTAC	4 cut(s)	1156, 1470, 1703, 2176
AfiI	CCNNNNNNNGG	1 cut(s)	931
AflII	CTTAAG	1 cut(s)	1982
AflIII	ACRYGT	1 cut(s)	1109
AjiI	CACGTC	1 cut(s)	1975
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	5 cut(s)	46, 705, 994, 1479, 2014
AluI	AGCT	5 cut(s)	46, 705, 994, 1479, 2014
Alw26I	GTCTC	6 cut(s)	504, 603, 1100, 1377, 1812, 1965
AlwI	GGATC	1 cut(s)	1004
AoxI	GGCC	1 cut(s)	1282
ApeKI	GCWGC	4 cut(s)	5, 779, 1205, 1553
ApoI	RAATTY	6 cut(s)	52, 482, 581, 1355, 1504, 1790
ArsI	GACNNNNNNTTYG	4 cut(s)	656, 688, 1865, 1897
AspLEI	GCGC	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	805, 1579
BbsI	GAAGAC	1 cut(s)	2195
BbvI	GCAGC	3 cut(s)	766, 1192, 1540
BccI	CCATC	1 cut(s)	205
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BcoDI	GTCTC	6 cut(s)	504, 603, 1100, 1377, 1812, 1965
BfrI	CTTAAG	1 cut(s)	1982
BisI	GCNGC	6 cut(s)	6, 258, 780, 1206, 1282, 1554
BlsI	GCNGC	6 cut(s)	7, 259, 781, 1207, 1283, 1555
BmgBI	CACGTC	1 cut(s)	1975
BmsI	GCATC	2 cut(s)	216, 1164
BpiI	GAAGAC	1 cut(s)	2195
BpmI	CTGGAG	3 cut(s)	780, 1554, 1989
BpuEI	CTTGAG	2 cut(s)	768, 1542
BsaBI	GATNNNNATC	1 cut(s)	1581
Bsc4I	CCNNNNNNNGG	1 cut(s)	931
Bse118I	RCCGGY	1 cut(s)	1436
Bse3DI	GCAATG	1 cut(s)	899
Bse8I	GATNNNNATC	1 cut(s)	1581
BseJI	GATNNNNATC	1 cut(s)	1581
BseLI	CCNNNNNNNGG	1 cut(s)	931
BseMI	GCAATG	1 cut(s)	899
BseMII	CTCAG	3 cut(s)	739, 1479, 1948
BseRI	GAGGAG	2 cut(s)	102, 2070
BseXI	GCAGC	3 cut(s)	766, 1192, 1540
BshFI	GGCC	1 cut(s)	1284
BsiSI	CCGG	1 cut(s)	1437
BslFI	GGGAC	4 cut(s)	172, 409, 1255, 2140
BslI	CCNNNNNNNGG	1 cut(s)	931
BsmAI	GTCTC	6 cut(s)	504, 603, 1100, 1377, 1812, 1965
BsmBI	CGTCTC	1 cut(s)	1965
BsmFI	GGGAC	4 cut(s)	172, 409, 1255, 2140
BsnI	GGCC	1 cut(s)	1284
Bsp143I	GATC	2 cut(s)	1009, 1495
BspACI	CCGC	7 cut(s)	258, 464, 872, 1281, 1337, 1646, 1772
BspANI	GGCC	1 cut(s)	1284
BspCNI	CTCAG	3 cut(s)	738, 1478, 1947
BspPI	GGATC	1 cut(s)	1004
BspQI	GCTCTTC	2 cut(s)	695, 1722
BspTI	CTTAAG	1 cut(s)	1982
BsrBI	CCGCTC	3 cut(s)	464, 1337, 1772
BsrDI	GCAATG	1 cut(s)	899
BsrFI	RCCGGY	1 cut(s)	1436
BssAI	RCCGGY	1 cut(s)	1436
BssMI	GATC	2 cut(s)	1009, 1495
BssNAI	GTATAC	1 cut(s)	376
Bst1107I	GTATAC	1 cut(s)	376
Bst4CI	ACNGT	3 cut(s)	852, 1626, 2179
Bst6I	CTCTTC	5 cut(s)	178, 695, 1126, 1722, 2146
BstAFI	CTTAAG	1 cut(s)	1982
BstC8I	GCNNGC	2 cut(s)	44, 1438
BstDEI	CTNAG	6 cut(s)	725, 771, 1465, 1499, 1545, 1934
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	2 cut(s)	1012, 1498
BstMAI	GTCTC	6 cut(s)	504, 603, 1100, 1377, 1812, 1965
BstMBI	GATC	2 cut(s)	1009, 1495
BstMWI	GCNNNNNNNGC	4 cut(s)	659, 1211, 1433, 1868
BstNSI	RCATGY	1 cut(s)	1113
BstV1I	GCAGC	3 cut(s)	766, 1192, 1540
BstV2I	GAAGAC	1 cut(s)	2195
BstZ17I	GTATAC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	1284
BtrI	CACGTC	1 cut(s)	1975
BtsIMutI	CAGTG	1 cut(s)	2184
Cac8I	GCNNGC	2 cut(s)	44, 1438
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	1436
CseI	GACGC	2 cut(s)	1079, 1211
Csp6I	GTAC	4 cut(s)	1155, 1469, 1702, 2175
CspCI	CAANNNNNGTGG	2 cut(s)	1669, 1704
CviAII	CATG	5 cut(s)	242, 367, 1110, 1190, 1737
CviQI	GTAC	4 cut(s)	1155, 1469, 1702, 2175
DdeI	CTNAG	6 cut(s)	725, 771, 1465, 1499, 1545, 1934
DpnI	GATC	2 cut(s)	1011, 1497
DpnII	GATC	2 cut(s)	1009, 1495
DraI	TTTAAA	8 cut(s)	184, 280, 418, 985, 1132, 1228, 1264, 2152
EaeI	YGGCCR	1 cut(s)	1282
Eam1104I	CTCTTC	5 cut(s)	178, 695, 1126, 1722, 2146
EarI	CTCTTC	5 cut(s)	178, 695, 1126, 1722, 2146
Eco57I	CTGAAG	2 cut(s)	159, 2127
EcoRI	GAATTC	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	1965
FaeI	CATG	5 cut(s)	245, 370, 1113, 1193, 1740
FalI	AAGNNNNNCTT	6 cut(s)	384, 416, 703, 735, 1912, 1944
FaqI	GGGAC	4 cut(s)	172, 409, 1255, 2140
FatI	CATG	5 cut(s)	241, 366, 1109, 1189, 1736
FblI	GTMKAC	3 cut(s)	24, 375, 1992
Fnu4HI	GCNGC	6 cut(s)	6, 258, 780, 1206, 1282, 1554
Fsp4HI	GCNGC	6 cut(s)	6, 258, 780, 1206, 1282, 1554
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	6 cut(s)	6, 258, 780, 1206, 1282, 1554
GsuI	CTGGAG	3 cut(s)	780, 1554, 1989
HaeIII	GGCC	1 cut(s)	1284
HapII	CCGG	1 cut(s)	1437
HgaI	GACGC	2 cut(s)	1079, 1211
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	5 cut(s)	245, 370, 1113, 1193, 1740
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	3 cut(s)	117, 1065, 2085
HindII	GTYRAC	3 cut(s)	117, 1065, 2085
HinfI	GANTC	3 cut(s)	816, 1140, 1590
HpaII	CCGG	1 cut(s)	1437
HphI	GGTGA	2 cut(s)	805, 1579
Hpy166II	GTNNAC	8 cut(s)	25, 117, 376, 796, 1065, 1570, 1993, 2085
Hpy188I	TCNGA	2 cut(s)	346, 1093
Hpy188III	TCNNGA	7 cut(s)	445, 759, 813, 1013, 1292, 1533, 1968
Hpy8I	GTNNAC	8 cut(s)	25, 117, 376, 796, 1065, 1570, 1993, 2085
HpyAV	CCTTC	1 cut(s)	1271
HpyCH4III	ACNGT	3 cut(s)	852, 1626, 2179
HpyCH4IV	ACGT	3 cut(s)	798, 1572, 1974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	659, 1211, 1433, 1868
HpyF3I	CTNAG	6 cut(s)	725, 771, 1465, 1499, 1545, 1934
HpySE526I	ACGT	3 cut(s)	798, 1572, 1974
Hsp92II	CATG	5 cut(s)	245, 370, 1113, 1193, 1740
HspAI	GCGC	1 cut(s)	435
KroI	GCCGGC	1 cut(s)	1436
KroNI	GCCGGC	1 cut(s)	1438
Kzo9I	GATC	2 cut(s)	1009, 1495
LguI	GCTCTTC	2 cut(s)	695, 1722
LmnI	GCTCC	2 cut(s)	835, 1609
LpnPI	CCDG	8 cut(s)	156, 729, 744, 1026, 1450, 1518, 1953, 2124
Lsp1109I	GCAGC	3 cut(s)	766, 1192, 1540
LweI	GCATC	2 cut(s)	216, 1164
MaeII	ACGT	3 cut(s)	798, 1572, 1974
MaeIII	GTNAC	2 cut(s)	325, 998
MalI	GATC	2 cut(s)	1011, 1497
MbiI	CCGCTC	3 cut(s)	464, 1337, 1772
MboI	GATC	2 cut(s)	1009, 1495
MfeI	CAATTG	1 cut(s)	1749
MlyI	GAGTC	2 cut(s)	810, 1584
MmeI	TCCRAC	2 cut(s)	857, 1631
MroNI	GCCGGC	1 cut(s)	1436
MslI	CAYNNNNRTG	3 cut(s)	320, 527, 626
MspCI	CTTAAG	1 cut(s)	1982
MspI	CCGG	1 cut(s)	1437
MunI	CAATTG	1 cut(s)	1749
MwoI	GCNNNNNNNGC	4 cut(s)	659, 1211, 1433, 1868
NaeI	GCCGGC	1 cut(s)	1438
NdeII	GATC	2 cut(s)	1009, 1495
NgoMIV	GCCGGC	1 cut(s)	1436
NlaIII	CATG	5 cut(s)	245, 370, 1113, 1193, 1740
NspI	RCATGY	1 cut(s)	1113
OliI	CACNNNNGTG	1 cut(s)	320
PciI	ACATGT	1 cut(s)	1109
PciSI	GCTCTTC	2 cut(s)	695, 1722
PdiI	GCCGGC	1 cut(s)	1438
PfeI	GAWTC	1 cut(s)	1140
PkrI	GCNGC	6 cut(s)	7, 259, 781, 1207, 1283, 1555
PleI	GAGTC	2 cut(s)	810, 1584
PpsI	GAGTC	2 cut(s)	810, 1584
PscI	ACATGT	1 cut(s)	1109
PsiI	TTATAA	1 cut(s)	132
RsaI	GTAC	4 cut(s)	1156, 1470, 1703, 2176
RsaNI	GTAC	4 cut(s)	1155, 1469, 1702, 2175
RseI	CAYNNNNRTG	3 cut(s)	320, 527, 626
SapI	GCTCTTC	2 cut(s)	695, 1722
SatI	GCNGC	6 cut(s)	6, 258, 780, 1206, 1282, 1554
Sau3AI	GATC	2 cut(s)	1009, 1495
SchI	GAGTC	2 cut(s)	810, 1584
SfaNI	GCATC	2 cut(s)	216, 1164
SmiMI	CAYNNNNRTG	3 cut(s)	320, 527, 626
SmlI	CTYRAG	3 cut(s)	783, 1557, 1982
SmoI	CTYRAG	3 cut(s)	783, 1557, 1982
SsiI	CCGC	7 cut(s)	258, 464, 872, 1281, 1337, 1646, 1772
SspI	AATATT	4 cut(s)	101, 1128, 1402, 2069
TaaI	ACNGT	3 cut(s)	852, 1626, 2179
TaiI	ACGT	3 cut(s)	801, 1575, 1977
TaqI	TCGA	3 cut(s)	446, 1143, 1293
TatI	WGTACW	3 cut(s)	1154, 1701, 2174
TauI	GCSGC	2 cut(s)	260, 1284
TfiI	GAWTC	1 cut(s)	1140
TscAI	CASTG	1 cut(s)	2184
TseI	GCWGC	4 cut(s)	5, 779, 1205, 1553
TspDTI	ATGAA	7 cut(s)	318, 668, 948, 1290, 1442, 1728, 1877
TspGWI	ACGGA	3 cut(s)	138, 1082, 2102
TspRI	CASTG	1 cut(s)	2184
Vha464I	CTTAAG	1 cut(s)	1982
XapI	RAATTY	6 cut(s)	52, 482, 581, 1355, 1504, 1790
XbaI	TCTAGA	1 cut(s)	812
XceI	RCATGY	1 cut(s)	1113
XmiI	GTMKAC	3 cut(s)	24, 375, 1992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.