Rmu_ssc0000281.1_g000030
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000281.1
OG0008860
Physical Location & Seq
Reverse (-)
118856 .. 119323
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000281.1_g000030.1.cds

Sequence Viewer

Length: 363 bp
atgcctcattctctgctctttctcgccagcactgccgaagactacgcatccgtcatgttgaggcttcctgacggcctgaagcacaagcctagtggctggtcagctagtgaccactgcatgtgggatgggttggagtgtgactctaatcatagagttgtgtccatcaacatggcctctaagactctatccgactctctccctccaagcctaaacaccttgacgaaggtcactaggggcggatccaagcctttcttgcccacccaattacccgaagtcgaactctcagacctcacttcctcagtgcgacactgcgactgcgatttgcagccatctcgccaagacatcaaggacttcgtcttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

5.62

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AclWI GGATC 2 cut(s) 234, 247
AcuI CTGAAG 1 cut(s) 98
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AlwI GGATC 2 cut(s) 234, 247
AoxI GGCC 2 cut(s) 73, 171
ApeKI GCWGC 1 cut(s) 325
BamHI GGATCC 1 cut(s) 239
BbsI GAAGAC 2 cut(s) 45, 349
BbvI GCAGC 1 cut(s) 337
BccI CCATC 3 cut(s) 119, 170, 337
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BfaI CTAG 4 cut(s) 90, 105, 231, 361
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 1 cut(s) 56
BoxI GACNNNNGTC 1 cut(s) 224
BpiI GAAGAC 2 cut(s) 45, 349
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BseGI GGATG 2 cut(s) 47, 130
BseMII CTCAG 2 cut(s) 297, 312
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 2 cut(s) 75, 173
BsnI GGCC 2 cut(s) 75, 173
Bsp143I GATC 1 cut(s) 239
BspACI CCGC 1 cut(s) 237
BspANI GGCC 2 cut(s) 75, 173
BspCNI CTCAG 2 cut(s) 296, 311
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 2 cut(s) 234, 247
BssMI GATC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 177, 283, 298
BstF5I GGATG 2 cut(s) 47, 130
BstKTI GATC 1 cut(s) 242
BstMBI GATC 1 cut(s) 239
BstMWI GCNNNNNNNGC 2 cut(s) 32, 253
BstNSI RCATGY 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 2 cut(s) 45, 349
BstX2I RGATCY 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 2 cut(s) 75, 173
BtsCI GGATG 2 cut(s) 47, 130
BtsI GCAGTG 3 cut(s) 30, 112, 307
BtsIMutI CAGTG 4 cut(s) 30, 112, 306, 307
Cac8I GCNNGC 1 cut(s) 28
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 3 cut(s) 55, 118, 169
CviJI RGCY 9 cut(s) 64, 75, 88, 96, 104, 173, 207, 247, 328
CviKI_1 RGCY 9 cut(s) 64, 75, 88, 96, 104, 173, 207, 247, 328
DdeI CTNAG 3 cut(s) 177, 283, 298
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
EciI GGCGGA 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 98
FaeI CATG 3 cut(s) 58, 121, 172
FaiI YATR 4 cut(s) 56, 119, 150, 170
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 3 cut(s) 54, 117, 168
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 2 cut(s) 34, 137
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 4 cut(s) 90, 105, 231, 361
GluI GCNGC 1 cut(s) 326
HaeIII GGCC 2 cut(s) 75, 173
Hin1II CATG 3 cut(s) 58, 121, 172
HinfI GANTC 3 cut(s) 140, 181, 191
Hpy188I TCNGA 2 cut(s) 190, 286
Hpy188III TCNNGA 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 117, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 253
HpyF3I CTNAG 3 cut(s) 177, 283, 298
Hsp92II CATG 3 cut(s) 58, 121, 172
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 4 cut(s) 40, 81, 82, 89
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 56
MaeI CTAG 4 cut(s) 90, 105, 231, 361
MaeIII GTNAC 3 cut(s) 107, 137, 226
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 2 cut(s) 50, 349
MflI RGATCY 1 cut(s) 239
MluCI AATT 1 cut(s) 263
MlyI GAGTC 3 cut(s) 134, 175, 185
MmeI TCCRAC 2 cut(s) 111, 213
MnlI CCTC 6 cut(s) 15, 54, 184, 210, 299, 307
MslI CAYNNNNRTG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 32, 253
NdeII GATC 1 cut(s) 239
NlaIII CATG 3 cut(s) 58, 121, 172
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 3 cut(s) 107, 137, 226
NspI RCATGY 1 cut(s) 121
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 3 cut(s) 134, 175, 185
PpsI GAGTC 3 cut(s) 134, 175, 185
PshAI GACNNNNGTC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 239
SchI GAGTC 3 cut(s) 134, 175, 185
SetI ASST 4 cut(s) 106, 218, 228, 291
SfaNI GCATC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 1 cut(s) 263
SsiI CCGC 1 cut(s) 237
SspMI CTAG 4 cut(s) 90, 105, 231, 361
TaqI TCGA 1 cut(s) 276
TasI AATT 1 cut(s) 263
TscAI CASTG 4 cut(s) 37, 119, 306, 314
TseFI GTSAC 3 cut(s) 107, 137, 226
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 3 cut(s) 107, 137, 226
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 4 cut(s) 37, 119, 306, 314
Tth111I GACNNNGTC 1 cut(s) 353
XceI RCATGY 1 cut(s) 121
XspI CTAG 4 cut(s) 90, 105, 231, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.