Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Forward (+)

40420068 .. 40420781

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG353400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTGCTATATTTGGATTGGCAGACTTTTTTACCATCAAGAAGCAGAAGATGTCAGACAATCTCAATGAGATTCCTCTGCAAGTATTAAGGGATGCAACCTCAGATTTCAGCACAGCCAATCTATTAGGACGAGGTGGATTTTCTTCTGTGTTCAAAGGTATTATGGAAGACAGTAGTATGAGGACTGTGAAGAAGATGGAAACGAAGCACTATGGTCGGTTGGACGCTAAGGCACTTAAATCCTTCAACTTTGAGATCAGAGTTCTCAATTCTGTTAGACATGCAAACTTAGTTGCATTAATCGGCTATTATCAGGATGAAGAGCACTTGATCTTGGTATATGAGTACATGTCTCATGGTACTCTTGGAAAACATCTATTCAATTGGAGAGATGAAGCTGTGCAAACCCTTGATTGGGGCAGAAGACTCAATATTGCCTTAAATATTGCAAGAGAGGTTGAGCACATTCACAAATTTGACATTAAAAAGCCTGTTCACAGATACTTGAAGCCCACCAACATTTTACTTGGAGAGGACTTTACTGCTAAAGTTGCTGACTTTGGTCTCGTTTGTCTATGTTCTTCAAGAGACAGATCTTCCTCACCTCTTTCCCAACCCTCTGGAACTCCAAAATGTTTGCGTGGAAGTGTAACTGATAAAGCAGATGTTTACAGCTTTGAATTGGCAGACATCAGAGAGAAGAGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

237

Amino Acids

26.96

Weight (kDa)

9.03

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	39 - 226	3.6e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	40 - 227	2.7e-26	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	2 cut(s)	350, 364
AfiI	CCNNNNNNNGG	2 cut(s)	417, 418
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	6 cut(s)	157, 250, 385, 511, 588, 683
AluBI	AGCT	2 cut(s)	401, 678
AluI	AGCT	2 cut(s)	401, 678
Alw21I	GWGCWC	2 cut(s)	330, 468
Alw26I	GTCTC	3 cut(s)	360, 572, 585
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	476
AseI	ATTAAT	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	597
BbsI	GAAGAC	2 cut(s)	177, 433
Bbv12I	GWGCWC	2 cut(s)	330, 468
BccI	CCATC	2 cut(s)	44, 193
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BcoDI	GTCTC	3 cut(s)	360, 572, 585
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	85
BoxI	GACNNNNGTC	1 cut(s)	564
BpiI	GAAGAC	2 cut(s)	177, 433
Bpu10I	CCTNAGC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 418
BseGI	GGATG	3 cut(s)	100, 325, 714
BseLI	CCNNNNNNNGG	2 cut(s)	417, 418
BseMII	CTCAG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	330, 468
BslI	CCNNNNNNNGG	2 cut(s)	417, 418
BsmAI	GTCTC	3 cut(s)	360, 572, 585
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	330, 468
Bsp143I	GATC	3 cut(s)	258, 333, 596
BspCNI	CTCAG	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	572
BssMI	GATC	3 cut(s)	258, 333, 596
Bst4CI	ACNGT	2 cut(s)	176, 190
Bst6I	CTCTTC	2 cut(s)	318, 698
BstDEI	CTNAG	3 cut(s)	103, 231, 292
BstF5I	GGATG	3 cut(s)	100, 325, 714
BstKTI	GATC	3 cut(s)	261, 336, 599
BstMAI	GTCTC	3 cut(s)	360, 572, 585
BstMBI	GATC	3 cut(s)	258, 333, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNSI	RCATGY	2 cut(s)	287, 355
BstPAI	GACNNNNGTC	1 cut(s)	564
BstV2I	GAAGAC	2 cut(s)	177, 433
BstX2I	RGATCY	1 cut(s)	596
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	100, 325, 714
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	349, 363
CviAII	CATG	3 cut(s)	284, 352, 359
CviJI	RGCY	7 cut(s)	5, 119, 309, 401, 493, 514, 678
CviKI_1	RGCY	7 cut(s)	5, 119, 309, 401, 493, 514, 678
CviQI	GTAC	2 cut(s)	349, 363
DdeI	CTNAG	3 cut(s)	103, 231, 292
DpnI	GATC	3 cut(s)	260, 335, 598
DpnII	GATC	3 cut(s)	258, 333, 596
Eam1104I	CTCTTC	2 cut(s)	318, 698
EarI	CTCTTC	2 cut(s)	318, 698
Eco31I	GGTCTC	1 cut(s)	572
FaeI	CATG	3 cut(s)	287, 355, 362
FatI	CATG	3 cut(s)	283, 351, 358
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	107, 332
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	287, 355, 362
HinfI	GANTC	2 cut(s)	73, 429
HphI	GGTGA	1 cut(s)	597
Hpy166II	GTNNAC	2 cut(s)	499, 673
Hpy188I	TCNGA	4 cut(s)	58, 106, 263, 698
Hpy188III	TCNNGA	4 cut(s)	40, 317, 588, 624
Hpy8I	GTNNAC	2 cut(s)	499, 673
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	176, 190
HpyCH4V	TGCA	6 cut(s)	82, 98, 287, 299, 406, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	3 cut(s)	103, 231, 292
Hsp92II	CATG	3 cut(s)	287, 355, 362
Kzo9I	GATC	3 cut(s)	258, 333, 596
LguI	GCTCTTC	1 cut(s)	318
LpnPI	CCDG	3 cut(s)	302, 507, 609
LweI	GCATC	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	3 cut(s)	260, 335, 598
MboI	GATC	3 cut(s)	258, 333, 596
MboII	GAAGA	9 cut(s)	61, 138, 182, 205, 208, 335, 438, 576, 591
MfeI	CAATTG	1 cut(s)	385
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	330, 468
MluCI	AATT	4 cut(s)	271, 385, 476, 683
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	204
MseI	TTAA	5 cut(s)	89, 240, 302, 443, 486
MunI	CAATTG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	554
NdeII	GATC	3 cut(s)	258, 333, 596
NlaIII	CATG	3 cut(s)	287, 355, 362
NspI	RCATGY	2 cut(s)	287, 355
PciI	ACATGT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PscI	ACATGT	1 cut(s)	351
PshAI	GACNNNNGTC	1 cut(s)	564
PshBI	ATTAAT	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	2 cut(s)	350, 364
RsaNI	GTAC	2 cut(s)	349, 363
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	5 cut(s)	89, 240, 302, 443, 486
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	258, 333, 596
SchI	GAGTC	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	330, 468
SetI	ASST	7 cut(s)	104, 139, 163, 403, 462, 610, 680
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	4 cut(s)	271, 385, 476, 683
SspI	AATATT	2 cut(s)	436, 448
TaaI	ACNGT	2 cut(s)	176, 190
TasI	AATT	4 cut(s)	271, 385, 476, 683
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	5 cut(s)	89, 240, 302, 443, 486
Tru9I	TTAA	5 cut(s)	89, 240, 302, 443, 486
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	336, 411
VspI	ATTAAT	1 cut(s)	302
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	2 cut(s)	287, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.