Rmu_ssc0000189.1_g000033
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000189.1
OG0008860
Physical Location & Seq
Reverse (-)
230719 .. 231232
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000189.1_g000033.1.cds

Sequence Viewer

Length: 402 bp
atgtctcatggtactcttggaaaacatatgttcaattggaaagatgaagctgtgcaaacccttgattggggcagaagactcaatattgccttaaatattacaagaaaggttgagcacattcacaaatttgacaataaaaagcttgttcacagatacttgaagcctaccaacattttacttggagaggactttactgctaaagttgccgactttggtctcatttgtctatgctcttcaagagacagatcttcctcacctctttcgattcccaacccgctggaactccaaaatgatggtagtgtccctcagatggataaagcaacacttgccaaggtgattgatggggagattaattccacacttgccaaggttattgatggggagattaattctatggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

133

Amino Acids

14.91

Weight (kDa)

6.96

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 66, 67, 310
AgsI TTSAA 3 cut(s) 34, 160, 237
AluBI AGCT 2 cut(s) 50, 142
AluI AGCT 2 cut(s) 50, 142
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 3 cut(s) 9, 221, 234
ApoI RAATTY 1 cut(s) 125
AseI ATTAAT 2 cut(s) 351, 387
AsuHPI GGTGA 2 cut(s) 246, 346
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 4 cut(s) 287, 304, 335, 371
BcoDI GTCTC 3 cut(s) 9, 221, 234
BglII AGATCT 1 cut(s) 245
BoxI GACNNNNGTC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 330, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 67, 310
BseDI CCNNGG 2 cut(s) 330, 366
BseLI CCNNNNNNNGG 3 cut(s) 66, 67, 310
BseMII CTCAG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 117
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 3 cut(s) 66, 67, 310
BsmAI GTCTC 3 cut(s) 9, 221, 234
BsmFI GGGAC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 330, 366
BssMI GATC 1 cut(s) 245
BssT1I CCWWGG 2 cut(s) 330, 366
Bst6I CTCTTC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 306
BstKTI GATC 1 cut(s) 248
BstMAI GTCTC 3 cut(s) 9, 221, 234
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 203, 326
BstPAI GACNNNNGTC 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 2 cut(s) 277, 293
BstYI RGATCY 1 cut(s) 245
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 8
CviJI RGCY 3 cut(s) 50, 142, 163
CviKI_1 RGCY 3 cut(s) 50, 142, 163
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 306
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 330, 366
Eco31I GGTCTC 1 cut(s) 221
EcoT14I CCWWGG 2 cut(s) 330, 366
ErhI CCWWGG 2 cut(s) 330, 366
FaeI CATG 1 cut(s) 11
FaiI YATR 5 cut(s) 9, 27, 29, 229, 395
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 1 cut(s) 287
FatI CATG 1 cut(s) 7
FauI CCCGC 1 cut(s) 282
FauNDI CATATG 1 cut(s) 27
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 78, 265
HphI GGTGA 2 cut(s) 246, 346
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 326
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 1 cut(s) 245
LguI GCTCTTC 1 cut(s) 238
LpnPI CCDG 1 cut(s) 263
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 3 cut(s) 87, 225, 240
MfeI CAATTG 1 cut(s) 34
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 4 cut(s) 34, 125, 352, 388
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 4 cut(s) 178, 262, 267, 315
MseI TTAA 3 cut(s) 92, 351, 387
MspA1I CMGCKG 1 cut(s) 277
MunI CAATTG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 203, 326
NdeI CATATG 1 cut(s) 27
NdeII GATC 1 cut(s) 245
NlaIII CATG 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 265
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PshAI GACNNNNGTC 1 cut(s) 213
PshBI ATTAAT 2 cut(s) 351, 387
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 3 cut(s) 92, 351, 387
Sau3AI GATC 1 cut(s) 245
SchI GAGTC 1 cut(s) 72
SduI GDGCHC 1 cut(s) 117
SetI ASST 6 cut(s) 52, 111, 144, 259, 336, 372
Sse9I AATT 4 cut(s) 34, 125, 352, 388
SsiI CCGC 1 cut(s) 275
SspI AATATT 2 cut(s) 85, 97
StyI CCWWGG 2 cut(s) 330, 366
TaqI TCGA 1 cut(s) 263
TasI AATT 4 cut(s) 34, 125, 352, 388
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 3 cut(s) 92, 351, 387
Tru9I TTAA 3 cut(s) 92, 351, 387
TspDTI ATGAA 1 cut(s) 60
VspI ATTAAT 2 cut(s) 351, 387
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.