Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Reverse (-)

116072 .. 116650

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggagtcgaaaaaatctagcaaaaggctcattcataaatatgccaatcaaaagcttgtccacagagatttgaagcccgcgaacattctacttggagaggaatttactgccaaagttgctgacttcggtcttgtccgtctgtgttcttcaagaaacaggtcatcgtctccgctttcgcagcccgctggaactccaggatattgggctccagaatgtttggctggaagtgtaattgacaaagtagatgtttacagctttgaggtaatattaatggagttgatcacgggaaagagagtaattggcagtcactggatagaagaggatgtgaatttggtgaattggtttcggaaattgctgactaatgatggtagtgtggttcagattgataaagcaacactagctaaggaaattgatggggagattaattccatggaagaggagactgtttcttgcttttgttctgtggcagaacttgctatccattgcaccgaaagggaacccaacaggaggccgcacatgtcacacgctatgatggaactttcaaaactagctgagaaaaccatcagagccaatagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

192

Amino Acids

21.53

Weight (kDa)

6.6

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	78, 170, 183, 512
AcsI	RAATTY	2 cut(s)	101, 328
AfiI	CCNNNNNNNGG	1 cut(s)	507
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	73, 150, 543
AjnI	CCWGG	1 cut(s)	193
AloI	GAACNNNNNNTCC	2 cut(s)	462, 494
AluBI	AGCT	4 cut(s)	55, 255, 401, 551
AluI	AGCT	4 cut(s)	55, 255, 401, 551
Alw26I	GTCTC	2 cut(s)	171, 434
AlwNI	CAGNNNCTG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	2 cut(s)	101, 328
AseI	ATTAAT	2 cut(s)	269, 423
AsuHPI	GGTGA	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	4 cut(s)	359, 407, 526, 569
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	171, 434
BfaI	CTAG	3 cut(s)	18, 398, 548
BisI	GCNGC	2 cut(s)	179, 512
BlsI	GCNGC	2 cut(s)	180, 513
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	207, 498
BmrFI	CCNGG	1 cut(s)	195
BoxI	GACNNNNGTC	1 cut(s)	126
BpmI	CTGGAG	2 cut(s)	177, 192
Bpu10I	CCTNAGC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	511
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmAI	GTCTC	2 cut(s)	171, 434
BsmBI	CGTCTC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	4 cut(s)	78, 170, 183, 512
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	207, 498
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	312, 429
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	78, 183
BstDEI	CTNAG	2 cut(s)	402, 552
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	2 cut(s)	171, 434
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 178, 398, 473
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	520
BstPAI	GACNNNNGTC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	511
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	78, 183
CaiI	CAGNNNCTG	1 cut(s)	309
CviAII	CATG	2 cut(s)	430, 517
DdeI	CTNAG	2 cut(s)	402, 552
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	312, 429
EarI	CTCTTC	2 cut(s)	312, 429
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	2 cut(s)	433, 520
FaiI	YATR	5 cut(s)	36, 42, 431, 518, 530
FatI	CATG	2 cut(s)	429, 516
FauI	CCCGC	2 cut(s)	85, 190
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	179, 512
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	179, 512
FspBI	CTAG	3 cut(s)	18, 398, 548
GluI	GCNGC	2 cut(s)	179, 512
GsuI	CTGGAG	2 cut(s)	177, 192
HaeIII	GGCC	1 cut(s)	511
Hin1II	CATG	2 cut(s)	433, 520
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	61, 250
Hpy188I	TCNGA	3 cut(s)	348, 381, 566
Hpy188III	TCNNGA	2 cut(s)	150, 209
Hpy8I	GTNNAC	2 cut(s)	61, 250
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 178, 398, 473
HpyF3I	CTNAG	2 cut(s)	402, 552
Hsp92II	CATG	2 cut(s)	433, 520
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	8 cut(s)	142, 171, 180, 207, 207, 222, 295, 490
Lsp1109I	GCAGC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	18, 398, 548
MaeIII	GTNAC	2 cut(s)	305, 519
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	3 cut(s)	138, 329, 446
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	8 cut(s)	101, 231, 297, 328, 337, 350, 408, 424
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	5 cut(s)	91, 253, 313, 430, 501
MseI	TTAA	2 cut(s)	269, 423
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	116, 178, 398, 473
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	433, 520
NlaIV	GGNNCC	2 cut(s)	207, 498
NmuCI	GTSAC	2 cut(s)	305, 519
NspI	RCATGY	1 cut(s)	520
PciI	ACATGT	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	180, 513
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	516
PshAI	GACNNNNGTC	1 cut(s)	126
PshBI	ATTAAT	2 cut(s)	269, 423
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	207, 498
PstNI	CAGNNNCTG	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	269, 423
SatI	GCNGC	2 cut(s)	179, 512
Sau3AI	GATC	1 cut(s)	279
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	6 cut(s)	57, 161, 257, 264, 403, 553
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	8 cut(s)	101, 231, 297, 328, 337, 350, 408, 424
SsiI	CCGC	4 cut(s)	78, 170, 183, 512
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	3 cut(s)	18, 398, 548
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	8 cut(s)	101, 231, 297, 328, 337, 350, 408, 424
TauI	GCSGC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	269, 423
Tru9I	TTAA	2 cut(s)	269, 423
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	305, 519
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	2 cut(s)	305, 519
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	314
VspI	ATTAAT	2 cut(s)	269, 423
XapI	RAATTY	2 cut(s)	101, 328
XceI	RCATGY	1 cut(s)	520
XspI	CTAG	3 cut(s)	18, 398, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.