Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Reverse (-)

29786463 .. 29787324

Gene Structure 862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002218

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCGGACAATCTCAATGAGATTCCTCTACAAGTATTAAGGGATGTAACCTCAGATTTCAGCGCAGCCAATCTATTAAGATGGGGTGGATTTTCTTCTGTGTTCAAGGGTATTATAGAAGACAGTAGTATGGTGGCTGTGAAGAAGATGGAAACGAAGCACTATGGTCTGTTGGATGCTAAGGCACTTAAATCCTTCAACTCTGAGATCAGAGTTCTCAATTCTGTTAGACATGTAAATTTAGTTGCATTAATCGGGTATTATCAGGATGAAGAGCACTTGATGATCTTGGTATATGAGTACATGTCTCACAGAGTACTCTTGGAAAACATCTGTTCAAGAGATGAAATTGTGCAATCCCTTGATTGGGGCAGAAGACTCAATATTGCTTTAAATATTGCAAGAGAGGTTAAGCACATTCATAAATTTGACAATCAAAAGCTTGTTCACAGATACTTGAAGCCCACCAACATTTTACTTGGTAGGACTTTACTGCTAAAGTTGCCGACTTTGGTCTTGTTTGTCTGTGTTCTTCAAGAAATAGATCCTCCTCACCTCTTTCCCAGCCCGCTGGAACTCCAGAATGATGGTCGTGTCCCTCAGATGGATGAAGCAACACTTGCCAAGATCATTGATGTGGAAATTAATTCCACACTTGTCAAGGTTGTTGATGGCGAGATTAATTCTATGGAATTGGAGACTGTTTCTTGCTTTTGTGTTGTGGCAGATATTGCTATCCATTGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

250

Amino Acids

28.31

Weight (kDa)

5.71

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	26 - 168	1e-16	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	29 - 168	2.2e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	2 cut(s)	238, 425
AfaI	GTAC	2 cut(s)	302, 318
AfiI	CCNNNNNNNGG	3 cut(s)	366, 367, 604
AflIII	ACRYGT	2 cut(s)	232, 303
AgsI	TTSAA	5 cut(s)	106, 199, 339, 460, 536
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	2 cut(s)	312, 692
AlwI	GGATC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	238, 425
AseI	ATTAAT	3 cut(s)	251, 645, 681
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	545
BbsI	GAAGAC	2 cut(s)	126, 382
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	5 cut(s)	75, 142, 581, 598, 665
BcoDI	GTCTC	2 cut(s)	312, 692
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmcAI	AGTACT	1 cut(s)	318
BmsI	GCATC	1 cut(s)	166
BoxI	GACNNNNGTC	1 cut(s)	512
BpiI	GAAGAC	2 cut(s)	126, 382
BpmI	CTGGAG	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 367, 604
Bse3DI	GCAATG	1 cut(s)	739
BseGI	GGATG	4 cut(s)	49, 181, 274, 613
BseLI	CCNNNNNNNGG	3 cut(s)	366, 367, 604
BseMI	GCAATG	1 cut(s)	739
BseMII	CTCAG	3 cut(s)	66, 195, 614
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	366, 367, 604
BsmAI	GTCTC	2 cut(s)	312, 692
BsmFI	GGGAC	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	207, 285, 544, 627
BspACI	CCGC	1 cut(s)	569
BspCNI	CTCAG	3 cut(s)	65, 196, 613
BspPI	GGATC	1 cut(s)	539
BspQI	GCTCTTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	739
BssMI	GATC	4 cut(s)	207, 285, 544, 627
Bst4CI	ACNGT	2 cut(s)	125, 703
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	2 cut(s)	620, 731
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	4 cut(s)	52, 180, 204, 600
BstF5I	GGATG	4 cut(s)	49, 181, 274, 613
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	4 cut(s)	210, 288, 547, 630
BstMAI	GTCTC	2 cut(s)	312, 692
BstMBI	GATC	4 cut(s)	207, 285, 544, 627
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 620, 731
BstNSI	RCATGY	2 cut(s)	236, 307
BstPAI	GACNNNNGTC	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	2 cut(s)	126, 382
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	2 cut(s)	571, 587
BstYI	RGATCY	1 cut(s)	544
BtsCI	GGATG	4 cut(s)	49, 181, 274, 613
Cac8I	GCNNGC	1 cut(s)	569
CfoI	GCGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	301, 317
CviAII	CATG	2 cut(s)	233, 304
CviJI	RGCY	5 cut(s)	68, 137, 442, 463, 567
CviKI_1	RGCY	5 cut(s)	68, 137, 442, 463, 567
CviQI	GTAC	2 cut(s)	301, 317
DdeI	CTNAG	4 cut(s)	52, 180, 204, 600
DpnI	GATC	4 cut(s)	209, 287, 546, 629
DpnII	GATC	4 cut(s)	207, 285, 544, 627
DraI	TTTAAA	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
FaeI	CATG	2 cut(s)	236, 307
FaiI	YATR	9 cut(s)	116, 131, 165, 234, 295, 297, 305, 423, 689
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	2 cut(s)	232, 303
FauI	CCCGC	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	4 cut(s)	56, 188, 281, 620
Fsp4HI	GCNGC	1 cut(s)	66
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	563
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	236, 307
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	2 cut(s)	22, 378
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	5 cut(s)	7, 55, 205, 212, 603
Hpy188III	TCNNGA	4 cut(s)	266, 339, 536, 580
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	125, 703
HpyCH4V	TGCA	4 cut(s)	248, 355, 401, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 620, 731
HpyF3I	CTNAG	4 cut(s)	52, 180, 204, 600
Hsp92II	CATG	2 cut(s)	236, 307
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	207, 285, 544, 627
LguI	GCTCTTC	1 cut(s)	267
LpnPI	CCDG	4 cut(s)	251, 557, 577, 593
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	4 cut(s)	209, 287, 546, 629
MboI	GATC	4 cut(s)	207, 285, 544, 627
MboII	GAAGA	7 cut(s)	87, 131, 154, 157, 284, 387, 524
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	8 cut(s)	220, 238, 348, 425, 642, 646, 682, 692
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	7 cut(s)	36, 61, 400, 558, 561, 566, 609
MseI	TTAA	8 cut(s)	38, 77, 189, 251, 392, 411, 645, 681
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	571
MwoI	GCNNNNNNNGC	3 cut(s)	502, 620, 731
NdeII	GATC	4 cut(s)	207, 285, 544, 627
NlaIII	CATG	2 cut(s)	236, 307
NspI	RCATGY	2 cut(s)	236, 307
PciI	ACATGT	2 cut(s)	232, 303
PciSI	GCTCTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PscI	ACATGT	2 cut(s)	232, 303
PshAI	GACNNNNGTC	1 cut(s)	512
PshBI	ATTAAT	3 cut(s)	251, 645, 681
PspFI	CCCAGC	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	2 cut(s)	302, 318
RsaNI	GTAC	2 cut(s)	301, 317
RseI	CAYNNNNRTG	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	8 cut(s)	38, 77, 189, 251, 392, 411, 645, 681
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	4 cut(s)	207, 285, 544, 627
ScaI	AGTACT	1 cut(s)	318
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	5 cut(s)	53, 411, 444, 558, 666
SfaNI	GCATC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	635
Sse9I	AATT	8 cut(s)	220, 238, 348, 425, 642, 646, 682, 692
SsiI	CCGC	1 cut(s)	569
SspI	AATATT	2 cut(s)	385, 397
TaaI	ACNGT	2 cut(s)	125, 703
TasI	AATT	8 cut(s)	220, 238, 348, 425, 642, 646, 682, 692
TatI	WGTACW	2 cut(s)	300, 316
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	8 cut(s)	38, 77, 189, 251, 392, 411, 645, 681
Tru9I	TTAA	8 cut(s)	38, 77, 189, 251, 392, 411, 645, 681
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	285, 360, 410, 624
VspI	ATTAAT	3 cut(s)	251, 645, 681
XapI	RAATTY	2 cut(s)	238, 425
XceI	RCATGY	2 cut(s)	236, 307
ZrmI	AGTACT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.