Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Reverse (-)

15891456 .. 15894727

Gene Structure 3272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCCTCCTTCTGTGCTCTTTCTCGCCGTGTTCCTTGTCGCCGGCGCTGCCAGAGACGACGCATCCATCATGTTGAAGCCCAAGACTAGTGGCTGGTCAGCCAGTGACCACTGCATGTGGGATGGGGTGGAGTGTGACTCTAATCATAGAGTTGTGTCCATCAACATGGCCTCTAAGGCTCTGTCCGGCTCTCTCCCTCCAAACCTAAACGCCCTGACGAAGCCGCAATGTTTCAATCCCAGAACTAACAAAAGTTTTAGGAAGAGACCCGACCAGATTATTGTGAGAGAGTCTAACCTGTTGGAGATTCGAGAAGGAGTCAAAAAAATCCAACAAAGGCCCATTCATAAATATGCCAATCAAAAACTTGTCCATAGAGATTTGAAGCCCGCGAACATTCTACTTGGCGAGGACTTTACTGTCAAAGTTGCCGACTTCGGTCTTGTCCGTCTATGTTCTTCAAGAAACAGGTCATTGTCTCTGCTTTCGCAGCCCGCTGAAACTCCAGGATATTGGGCTCCAGAATGTTTGGCTGGAAGTGTAATTGATAAAGCAGATGTTTACAGCTTTGGGGTAATATTAATGGAGTTGATCACGGGAAAGAGAGTAATTGGCAGTCACTGGAGAGAAGAGGATGTAAATTTGGTGAATTGGTTTCGGAAATTGCTGACTAATGATGGTAGTGGAACACTAGCCATGGAAGAGGAGATCGTTTCTTGCTTTTGTTCTGTGGCAGTTATTACCATCCACTGCACCGAAAGGGAACCCAACAGGAGGCCGCACATGTCACACGCTGTGATGGAACTTTCAAAACTAGCTGAGAAACAGTGGAAACCATCAGAGCCAATAGTTGACGACAATCCTTTGATTGCTAAGTCTATGCTTGAAGCCGTACGTGAGTGGAAAAAGGAGGAGGAAGTAAGTACTTTGGAGTCTCGTACTACACGAAAGGCCGATGGAGGGAAAGATGAGGGGGAAATTTGTGAAGAGGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

333

Amino Acids

37.14

Weight (kDa)

6.48

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	119 - 268	1.5e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	120 - 265	2.4e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccII	CGCG	1 cut(s)	392
AciI	CCGC	4 cut(s)	224, 390, 495, 779
AcsI	RAATTY	2 cut(s)	640, 978
AdeI	CACNNNGTG	1 cut(s)	796
AfaI	GTAC	3 cut(s)	894, 925, 940
AfiI	CCNNNNNNNGG	2 cut(s)	774, 960
AflIII	ACRYGT	1 cut(s)	783
AgsI	TTSAA	6 cut(s)	76, 235, 385, 462, 810, 887
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	2 cut(s)	567, 818
AluI	AGCT	2 cut(s)	567, 818
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	4 cut(s)	48, 259, 483, 939
AlwNI	CAGNNNCTG	1 cut(s)	621
AoxI	GGCC	4 cut(s)	168, 338, 776, 951
ApeKI	GCWGC	2 cut(s)	47, 490
ApoI	RAATTY	2 cut(s)	640, 978
AseI	ATTAAT	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	34, 502
BccI	CCATC	9 cut(s)	74, 116, 167, 671, 752, 793, 844, 950, 986
BceAI	ACGGC	2 cut(s)	11, 875
BciT130I	CCWGG	1 cut(s)	507
BclI	TGATCA	1 cut(s)	591
BcoDI	GTCTC	4 cut(s)	48, 259, 483, 939
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	3 cut(s)	87, 692, 815
BfoI	RGCGCY	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	4 cut(s)	48, 224, 491, 779
BlsI	GCNGC	4 cut(s)	49, 225, 492, 780
BmcAI	AGTACT	1 cut(s)	925
Bme1390I	CCNGG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	2 cut(s)	519, 765
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	71
BoxI	GACNNNNGTC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	3 cut(s)	489, 504, 643
BsaAI	YACGTR	1 cut(s)	896
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	2 cut(s)	774, 960
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	102, 626
Bse3DI	GCAATG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	5 cut(s)	62, 127, 640, 744, 997
BseLI	CCNNNNNNNGG	2 cut(s)	774, 960
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	2 cut(s)	102, 626
BseRI	GAGGAG	2 cut(s)	719, 926
BseXI	GCAGC	2 cut(s)	34, 502
BsgI	GTGCAG	1 cut(s)	736
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	4 cut(s)	170, 340, 778, 953
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	42, 186
BsiWI	CGTACG	1 cut(s)	892
BslI	CCNNNNNNNGG	2 cut(s)	774, 960
BsmAI	GTCTC	4 cut(s)	48, 259, 483, 939
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	170, 340, 778, 953
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	18, 520
Bsp143I	GATC	2 cut(s)	591, 708
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	4 cut(s)	224, 390, 495, 779
BspANI	GGCC	4 cut(s)	170, 340, 778, 953
BspCNI	CTCAG	1 cut(s)	811
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	519, 765
BspTNI	GGTCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	102, 626
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	2 cut(s)	591, 708
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	421, 828
Bst6I	CTCTTC	4 cut(s)	257, 624, 696, 981
BstBAI	YACGTR	1 cut(s)	896
BstC8I	GCNNGC	3 cut(s)	43, 390, 495
BstDEI	CTNAG	3 cut(s)	174, 819, 873
BstDSI	CCRYGG	1 cut(s)	696
BstF5I	GGATG	5 cut(s)	62, 127, 640, 744, 997
BstFNI	CGCG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	594, 711
BstMAI	GTCTC	4 cut(s)	48, 259, 483, 939
BstMBI	GATC	2 cut(s)	591, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 176, 490
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	2 cut(s)	118, 787
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	505
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	34, 502
BstXI	CCANNNNNNTGG	2 cut(s)	166, 513
BsuRI	GGCC	4 cut(s)	170, 340, 778, 953
BtgI	CCRYGG	1 cut(s)	696
BtsCI	GGATG	5 cut(s)	62, 127, 640, 744, 997
BtsI	GCAGTG	2 cut(s)	109, 748
BtsIMutI	CAGTG	5 cut(s)	109, 109, 619, 748, 833
Cac8I	GCNNGC	3 cut(s)	43, 390, 495
CaiI	CAGNNNCTG	1 cut(s)	621
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	339
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	893, 924, 939
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	5 cut(s)	70, 115, 166, 697, 784
CviQI	GTAC	3 cut(s)	893, 924, 939
DdeI	CTNAG	3 cut(s)	174, 819, 873
DpnI	GATC	2 cut(s)	593, 710
DpnII	GATC	2 cut(s)	591, 708
DraIII	CACNNNGTG	1 cut(s)	796
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eam1104I	CTCTTC	4 cut(s)	257, 624, 696, 981
EarI	CTCTTC	4 cut(s)	257, 624, 696, 981
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	5 cut(s)	73, 118, 169, 700, 787
FatI	CATG	5 cut(s)	69, 114, 165, 696, 783
FauI	CCCGC	2 cut(s)	397, 502
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	4 cut(s)	48, 224, 491, 779
FokI	GGATG	4 cut(s)	49, 134, 647, 731
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	4 cut(s)	48, 224, 491, 779
FspBI	CTAG	3 cut(s)	87, 692, 815
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	48, 224, 491, 779
GsuI	CTGGAG	3 cut(s)	489, 504, 643
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	4 cut(s)	170, 340, 778, 953
HapII	CCGG	2 cut(s)	42, 186
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	5 cut(s)	73, 118, 169, 700, 787
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	5 cut(s)	137, 290, 307, 318, 932
HpaII	CCGG	2 cut(s)	42, 186
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	2 cut(s)	562, 853
Hpy188I	TCNGA	2 cut(s)	660, 841
Hpy188III	TCNNGA	3 cut(s)	311, 462, 521
Hpy8I	GTNNAC	2 cut(s)	562, 853
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	18, 308
HpyCH4III	ACNGT	2 cut(s)	421, 828
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	2 cut(s)	114, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 176, 490
HpyF3I	CTNAG	3 cut(s)	174, 819, 873
HpySE526I	ACGT	1 cut(s)	895
Hsp92II	CATG	5 cut(s)	73, 118, 169, 700, 787
HspAI	GCGC	1 cut(s)	45
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	591, 708
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	34, 502
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	3 cut(s)	87, 692, 815
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	4 cut(s)	104, 134, 617, 786
MalI	GATC	2 cut(s)	593, 710
MboI	GATC	2 cut(s)	591, 708
MboII	GAAGA	5 cut(s)	274, 450, 641, 713, 998
MhlI	GDGCHC	2 cut(s)	18, 520
MluCI	AATT	6 cut(s)	543, 609, 640, 649, 662, 978
MlyI	GAGTC	4 cut(s)	131, 299, 327, 941
MmeI	TCCRAC	2 cut(s)	282, 355
MreI	CGCCGGCG	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	581
MslI	CAYNNNNRTG	2 cut(s)	164, 351
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	42, 186
MspR9I	CCNGG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	47, 176, 490
NaeI	GCCGGC	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	2 cut(s)	591, 708
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	5 cut(s)	73, 118, 169, 700, 787
NlaIV	GGNNCC	2 cut(s)	519, 765
NmuCI	GTSAC	4 cut(s)	104, 134, 617, 786
NspI	RCATGY	2 cut(s)	118, 787
PciI	ACATGT	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	943
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	307
Pfl23II	CGTACG	1 cut(s)	892
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	4 cut(s)	49, 225, 492, 780
PleI	GAGTC	4 cut(s)	131, 298, 326, 940
PpsI	GAGTC	4 cut(s)	131, 298, 326, 940
Ppu21I	YACGTR	1 cut(s)	896
PscI	ACATGT	1 cut(s)	783
PshAI	GACNNNNGTC	1 cut(s)	438
PshBI	ATTAAT	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspLI	CGTACG	1 cut(s)	892
PspN4I	GGNNCC	2 cut(s)	519, 765
PspPI	GGNCC	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	621
RsaI	GTAC	3 cut(s)	894, 925, 940
RsaNI	GTAC	3 cut(s)	893, 924, 939
RseI	CAYNNNNRTG	2 cut(s)	164, 351
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	4 cut(s)	48, 224, 491, 779
Sau3AI	GATC	2 cut(s)	591, 708
Sau96I	GGNCC	1 cut(s)	339
ScaI	AGTACT	1 cut(s)	925
SchI	GAGTC	4 cut(s)	131, 299, 327, 941
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	18, 520
SetI	ASST	6 cut(s)	207, 300, 473, 569, 820, 898
SfaNI	GCATC	1 cut(s)	71
SgrAI	CRCCGGYG	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	164, 351
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	6 cut(s)	543, 609, 640, 649, 662, 978
SsiI	CCGC	4 cut(s)	224, 390, 495, 779
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	3 cut(s)	87, 692, 815
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	2 cut(s)	421, 828
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	1 cut(s)	310
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	6 cut(s)	543, 609, 640, 649, 662, 978
TatI	WGTACW	1 cut(s)	923
TauI	GCSGC	2 cut(s)	226, 781
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	5 cut(s)	109, 116, 626, 755, 833
TseFI	GTSAC	4 cut(s)	104, 134, 617, 786
TseI	GCWGC	2 cut(s)	47, 490
Tsp45I	GTSAC	4 cut(s)	104, 134, 617, 786
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	5 cut(s)	109, 116, 626, 755, 833
VspI	ATTAAT	1 cut(s)	581
XapI	RAATTY	2 cut(s)	640, 978
XceI	RCATGY	2 cut(s)	118, 787
XspI	CTAG	3 cut(s)	87, 692, 815
ZrmI	AGTACT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.