Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Forward (+)

39699648 .. 39700310

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCAGACAATCTCAATGAGATTCCTCTGCAAGTATTAAGGGATGCAACCTCAGATTTCAGCACAGCCAATCTATTAGGACGAGGTGGATTTTCTTCTGTGTTCAAAGGTATTATGGAAGACAGTAGTATGAGGGTTGTGAAGAAGATGGAAACAAAGCACTATGATCGGTTGGACGCTAAGGCACTTAAATCCTTTAACTCTGAGATAAGAGTTCTCAATTCTGTTAGACATGCAAATTTAGTTACATTAATCGGCTATTATCAGGATGAAGAGCACTTGATCTTGGTATATGAGTACATGTCTCATGGTACTCTTAGAAAACATATGTTCAATTGGAGAGATGAAGCTGTGCAAACCCTTGATTGGGGCAGAAGACTCAATATTGCCTTAAATATTGCAAGAGAGGTTGAGCACATTCACAAATTTGGCAATAAAAAGCTTGTTCACAGATACTTGAAGCCCACCAACATTTTACTTGGAGAGGACTTTACTGCTAAAGTTGCTGACTTTGGTCTCGTTTGTCTATGTTCTTTAAGAGACAGATATTCCTCACCTCTTTCCCAACCCACTGGAACTCCAAAATGTTTGCGTGGAAGTGTAATTGATAAAGCAAATGTTTACAGCTTTGAATTGGCAGTCATCAGACAGAAGAGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

220

Amino Acids

25.27

Weight (kDa)

9.32

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 197	1.9e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 184	4.5e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	238, 425
AfaI	GTAC	2 cut(s)	299, 313
AfiI	CCNNNNNNNGG	2 cut(s)	366, 367
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	4 cut(s)	106, 334, 460, 632
AluBI	AGCT	3 cut(s)	350, 442, 627
AluI	AGCT	3 cut(s)	350, 442, 627
Alw21I	GWGCWC	2 cut(s)	279, 417
Alw26I	GTCTC	3 cut(s)	309, 521, 534
ApoI	RAATTY	2 cut(s)	238, 425
AseI	ATTAAT	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	126, 382
Bbv12I	GWGCWC	2 cut(s)	279, 417
BccI	CCATC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcoDI	GTCTC	3 cut(s)	309, 521, 534
BmsI	GCATC	1 cut(s)	34
BoxI	GACNNNNGTC	1 cut(s)	513
BpiI	GAAGAC	2 cut(s)	126, 382
Bpu10I	CCTNAGC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 367
Bse1I	ACTGG	1 cut(s)	577
BseGI	GGATG	3 cut(s)	49, 274, 663
BseLI	CCNNNNNNNGG	2 cut(s)	366, 367
BseMII	CTCAG	2 cut(s)	66, 195
BseNI	ACTGG	1 cut(s)	577
BsiHKAI	GWGCWC	2 cut(s)	279, 417
BslI	CCNNNNNNNGG	2 cut(s)	366, 367
BsmAI	GTCTC	3 cut(s)	309, 521, 534
Bso31I	GGTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	279, 417
Bsp143I	GATC	2 cut(s)	166, 282
BspCNI	CTCAG	2 cut(s)	65, 196
BspQI	GCTCTTC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	577
BssMI	GATC	2 cut(s)	166, 282
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	2 cut(s)	267, 647
BstDEI	CTNAG	4 cut(s)	52, 180, 204, 317
BstF5I	GGATG	3 cut(s)	49, 274, 663
BstKTI	GATC	2 cut(s)	169, 285
BstMAI	GTCTC	3 cut(s)	309, 521, 534
BstMBI	GATC	2 cut(s)	166, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNSI	RCATGY	2 cut(s)	236, 304
BstPAI	GACNNNNGTC	1 cut(s)	513
BstV2I	GAAGAC	2 cut(s)	126, 382
BstXI	CCANNNNNNTGG	1 cut(s)	572
BtsCI	GGATG	3 cut(s)	49, 274, 663
BtsIMutI	CAGTG	1 cut(s)	570
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	298, 312
CviAII	CATG	3 cut(s)	233, 301, 308
CviJI	RGCY	6 cut(s)	68, 258, 350, 442, 463, 627
CviKI_1	RGCY	6 cut(s)	68, 258, 350, 442, 463, 627
CviQI	GTAC	2 cut(s)	298, 312
DdeI	CTNAG	4 cut(s)	52, 180, 204, 317
DpnI	GATC	2 cut(s)	168, 284
DpnII	GATC	2 cut(s)	166, 282
Eam1104I	CTCTTC	2 cut(s)	267, 647
EarI	CTCTTC	2 cut(s)	267, 647
Eco31I	GGTCTC	1 cut(s)	521
FaeI	CATG	3 cut(s)	236, 304, 311
FatI	CATG	3 cut(s)	232, 300, 307
FauNDI	CATATG	1 cut(s)	327
FokI	GGATG	2 cut(s)	56, 281
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	236, 304, 311
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	2 cut(s)	22, 378
HphI	GGTGA	1 cut(s)	546
Hpy166II	GTNNAC	2 cut(s)	448, 622
Hpy188I	TCNGA	4 cut(s)	7, 55, 205, 647
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	448, 622
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	5 cut(s)	31, 47, 236, 355, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	4 cut(s)	52, 180, 204, 317
Hsp92II	CATG	3 cut(s)	236, 304, 311
Kzo9I	GATC	2 cut(s)	166, 282
LguI	GCTCTTC	1 cut(s)	267
LpnPI	CCDG	2 cut(s)	251, 558
LweI	GCATC	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	168, 284
MboI	GATC	2 cut(s)	166, 282
MboII	GAAGA	6 cut(s)	87, 131, 154, 157, 284, 387
MfeI	CAATTG	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	279, 417
MluCI	AATT	6 cut(s)	220, 238, 334, 425, 603, 632
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	9 cut(s)	36, 61, 77, 126, 400, 478, 562, 567, 648
MseI	TTAA	6 cut(s)	38, 189, 198, 251, 392, 536
MunI	CAATTG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	2 cut(s)	166, 282
NlaIII	CATG	3 cut(s)	236, 304, 311
NspI	RCATGY	2 cut(s)	236, 304
PciI	ACATGT	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PscI	ACATGT	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	513
PshBI	ATTAAT	1 cut(s)	251
RsaI	GTAC	2 cut(s)	299, 313
RsaNI	GTAC	2 cut(s)	298, 312
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	38, 189, 198, 251, 392, 536
Sau3AI	GATC	2 cut(s)	166, 282
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	279, 417
SetI	ASST	8 cut(s)	53, 88, 112, 352, 411, 444, 559, 629
SfaNI	GCATC	1 cut(s)	34
Sse9I	AATT	6 cut(s)	220, 238, 334, 425, 603, 632
SspI	AATATT	2 cut(s)	385, 397
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	6 cut(s)	220, 238, 334, 425, 603, 632
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	6 cut(s)	38, 189, 198, 251, 392, 536
Tru9I	TTAA	6 cut(s)	38, 189, 198, 251, 392, 536
TscAI	CASTG	1 cut(s)	577
TspDTI	ATGAA	2 cut(s)	285, 360
TspRI	CASTG	1 cut(s)	577
VspI	ATTAAT	1 cut(s)	251
XapI	RAATTY	2 cut(s)	238, 425
XceI	RCATGY	2 cut(s)	236, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.