Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Reverse (-)

23689580 .. 23690963

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGGCGATTCCACTCTTCTCCCTCTTTTTGCTCGTCCTGGCCGCTTCCTTCTCCGCCGTCGACGACTCGGCCGCGATGACCGAGCTTCGAACAGGCCTCATCCCCAATCCGAGCGGCTGGGCCGCCCAGTCCGACTGGTGTCACTGGCCCGGCGTCCAATGCGACGCCTCGAGGTCCGTTACGGCGATCGATCTCGCTTCCCGCTCTCTCTCCGGCAGCCTACACGCTGTCCGGAACTTGACCGAGCTAGCACGGCTGCGGCTCGCCGACAACCACTTCTCCGGTCGTCTTCCGGACTTCTCCGGCTGCACGGCACTCACGGAGCTTGATCTTCGCGGCAAGGCATTCACCGGACCGGTCGTCCTCACGGCAATGCCGCCGGCTCTGAAAAATCTCTCTCTCGACGGCAACCATCTTCAAGGGGCGTTGCCAGAGTTCGGGTCGAGGAGCGTCGGCGTATCCTTCAACAATAATAGCTTCTGTAAGACTAGTCCGGGGAATTGTGACCCGCAGGTGTTGGCTCTGCTCGGAGTAGCAGAGGGCTTCGGCTTCCCTTTGGTCCTCGCACAGGCTTGGCGGGGGAACAATGCCTGTCAGTGGGAGTTGATCAACTGCGATCATTCAGGGAATGTGGCTATGATAACCCTAATCAGTCATGATTTCAGAGGCGGGCTCATCTCACCCGAGTTGAGTCAATTGAGGTATCTTAGTTGCCTCACACTCAAGGGTAATCGAGACTGGGCATGGGAGACTTACCTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase_Tyr

Protein Analysis

256

Amino Acids

27.39

Weight (kDa)

5.83

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	505
AbsI	CCTCGAGG	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	505
AccBSI	CCGCTC	2 cut(s)	117, 207
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	2 cut(s)	77, 339
AccIII	TCCGGA	2 cut(s)	234, 295
AcoI	YGGCCR	2 cut(s)	42, 72
AcyI	GRCGYC	2 cut(s)	156, 168
AfiI	CCNNNNNNNGG	3 cut(s)	440, 571, 600
AgeI	ACCGGT	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	422, 469
AhdI	GACNNNNNGTC	1 cut(s)	362
AhlI	ACTAGT	1 cut(s)	491
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	5 cut(s)	88, 250, 328, 480, 765
AluI	AGCT	5 cut(s)	88, 250, 328, 480, 765
Alw26I	GTCTC	2 cut(s)	732, 746
Ama87I	CYCGRG	2 cut(s)	172, 686
Aor13HI	TCCGGA	2 cut(s)	234, 295
AoxI	GGCC	5 cut(s)	42, 72, 97, 123, 149
ApeKI	GCWGC	3 cut(s)	219, 259, 309
AsiGI	ACCGGT	1 cut(s)	358
AspS9I	GGNCC	5 cut(s)	123, 150, 177, 356, 562
AsuC2I	CCSGG	2 cut(s)	153, 498
AsuHPI	GGTGA	2 cut(s)	343, 675
AsuII	TTCGAA	1 cut(s)	91
AsuNHI	GCTAGC	1 cut(s)	250
AvaI	CYCGRG	2 cut(s)	172, 686
AvaII	GGWCC	3 cut(s)	177, 356, 562
BanII	GRGCYC	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	284
BbvCI	CCTCAGC	1 cut(s)	761
BbvI	GCAGC	3 cut(s)	231, 246, 296
BccI	CCATC	1 cut(s)	423
BceAI	ACGGC	6 cut(s)	44, 201, 272, 330, 387, 424
BciT130I	CCWGG	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	472
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	2 cut(s)	153, 498
BcoDI	GTCTC	2 cut(s)	732, 746
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	2 cut(s)	251, 492
BfuAI	ACCTGC	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	41, 153, 498
Bme18I	GGWCC	3 cut(s)	177, 356, 562
BmeRI	GACNNNNNGTC	1 cut(s)	362
BmeT110I	CYCGRG	2 cut(s)	172, 686
BmgT120I	GGNCC	5 cut(s)	123, 150, 177, 356, 562
BmrFI	CCNGG	3 cut(s)	41, 153, 498
BmrI	ACTGGG	2 cut(s)	124, 751
BmtI	GCTAGC	1 cut(s)	254
BmuI	ACTGGG	2 cut(s)	124, 751
BoxI	GACNNNNGTC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	660, 692
Bpu10I	CCTNAGC	1 cut(s)	761
Bpu14I	TTCGAA	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	2 cut(s)	153, 498
Bsa29I	ATCGAT	1 cut(s)	192
BsaHI	GRCGYC	2 cut(s)	156, 168
BsaJI	CCNNGG	1 cut(s)	497
BsaWI	WCCGGW	5 cut(s)	234, 284, 295, 353, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 571, 600
Bse118I	RCCGGY	2 cut(s)	358, 382
Bse1I	ACTGG	4 cut(s)	130, 143, 152, 746
Bse3DI	GCAATG	1 cut(s)	381
BseAI	TCCGGA	2 cut(s)	234, 295
BseBI	CCWGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	440, 571, 600
BseMI	GCAATG	1 cut(s)	381
BseNI	ACTGG	4 cut(s)	130, 143, 152, 746
BseRI	GAGGAG	1 cut(s)	463
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	231, 246, 296
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	2 cut(s)	77, 339
Bsh1285I	CGRYCG	4 cut(s)	75, 192, 289, 363
BshFI	GGCC	5 cut(s)	44, 74, 99, 125, 151
BshTI	ACCGGT	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	192
BsiEI	CGRYCG	4 cut(s)	75, 192, 289, 363
BsiHKCI	CYCGRG	2 cut(s)	172, 686
BslI	CCNNNNNNNGG	3 cut(s)	440, 571, 600
BsmAI	GTCTC	2 cut(s)	732, 746
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	5 cut(s)	44, 74, 99, 125, 151
BsoBI	CYCGRG	2 cut(s)	172, 686
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp13I	TCCGGA	2 cut(s)	234, 295
Bsp143I	GATC	5 cut(s)	189, 193, 331, 609, 619
BspANI	GGCC	5 cut(s)	44, 74, 99, 125, 151
BspDI	ATCGAT	1 cut(s)	192
BspEI	TCCGGA	2 cut(s)	234, 295
BspFNI	CGCG	2 cut(s)	77, 339
BspHI	TCATGA	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	505
BspOI	GCTAGC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	91
BsrBI	CCGCTC	2 cut(s)	117, 207
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	2 cut(s)	358, 382
BsrI	ACTGG	4 cut(s)	130, 143, 152, 746
BssAI	RCCGGY	2 cut(s)	358, 382
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	5 cut(s)	189, 193, 331, 609, 619
BssNI	GRCGYC	2 cut(s)	156, 168
Bst2UI	CCWGG	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	2 cut(s)	156, 168
BstBI	TTCGAA	1 cut(s)	91
BstC8I	GCNNGC	4 cut(s)	252, 267, 384, 674
BstDEI	CTNAG	2 cut(s)	710, 761
BstENI	CCTNNNNNAGG	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	2 cut(s)	77, 339
BstKTI	GATC	5 cut(s)	192, 196, 334, 612, 622
BstMAI	GTCTC	2 cut(s)	732, 746
BstMBI	GATC	5 cut(s)	189, 193, 331, 609, 619
BstMCI	CGRYCG	4 cut(s)	75, 192, 289, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 256
BstNI	CCWGG	1 cut(s)	41
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	3 cut(s)	39, 151, 496
BstUI	CGCG	2 cut(s)	77, 339
BstV1I	GCAGC	3 cut(s)	231, 246, 296
BstV2I	GAAGAC	1 cut(s)	284
BstZI	CGGCCG	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	5 cut(s)	44, 74, 99, 125, 151
BsuTUI	ATCGAT	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	145, 605
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	4 cut(s)	252, 267, 384, 674
CciI	TCATGA	1 cut(s)	658
Cfr10I	RCCGGY	2 cut(s)	358, 382
Cfr13I	GGNCC	5 cut(s)	123, 150, 177, 356, 562
ClaI	ATCGAT	1 cut(s)	192
CpoI	CGGWCCG	1 cut(s)	356
CseI	GACGC	3 cut(s)	145, 176, 442
CspAI	ACCGGT	1 cut(s)	358
CspI	CGGWCCG	1 cut(s)	356
CviAII	CATG	2 cut(s)	659, 747
DdeI	CTNAG	2 cut(s)	710, 761
DpnI	GATC	5 cut(s)	191, 195, 333, 611, 621
DpnII	GATC	5 cut(s)	189, 193, 331, 609, 619
DriI	GACNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	2 cut(s)	42, 72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	23
Eam1105I	GACNNNNNGTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	678
Eco47I	GGWCC	3 cut(s)	177, 356, 562
Eco52I	CGGCCG	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	172, 686
EcoNI	CCTNNNNNAGG	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	678
FaeI	CATG	2 cut(s)	662, 750
FaiI	YATR	3 cut(s)	641, 660, 748
FatI	CATG	2 cut(s)	658, 746
FauI	CCCGC	4 cut(s)	212, 519, 573, 665
FbaI	TGATCA	1 cut(s)	609
FblI	GTMKAC	1 cut(s)	63
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	678
FspBI	CTAG	2 cut(s)	251, 492
GsaI	CCCAGC	1 cut(s)	124
HaeIII	GGCC	5 cut(s)	44, 74, 99, 125, 151
HgaI	GACGC	3 cut(s)	145, 176, 442
Hin1I	GRCGYC	2 cut(s)	156, 168
Hin1II	CATG	2 cut(s)	662, 750
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	10, 68, 694
HphI	GGTGA	2 cut(s)	343, 675
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	5 cut(s)	114, 136, 390, 533, 668
Hpy188III	TCNNGA	5 cut(s)	235, 296, 404, 659, 737
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	5 cut(s)	65, 68, 170, 410, 458
HpyAV	CCTTC	2 cut(s)	61, 475
HpyCH4V	TGCA	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 256
HpyF3I	CTNAG	2 cut(s)	710, 761
Hsp92I	GRCGYC	2 cut(s)	156, 168
Hsp92II	CATG	2 cut(s)	662, 750
Kpn2I	TCCGGA	2 cut(s)	234, 295
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	5 cut(s)	189, 193, 331, 609, 619
LmnI	GCTCC	2 cut(s)	325, 450
Lsp1109I	GCAGC	3 cut(s)	231, 246, 296
MaeI	CTAG	2 cut(s)	251, 492
MaeIII	GTNAC	3 cut(s)	143, 181, 506
MalI	GATC	5 cut(s)	191, 195, 333, 611, 621
MbiI	CCGCTC	2 cut(s)	117, 207
MboI	GATC	5 cut(s)	189, 193, 331, 609, 619
MboII	GAAGA	4 cut(s)	10, 284, 326, 410
MfeI	CAATTG	1 cut(s)	698
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	2 cut(s)	502, 698
MlyI	GAGTC	2 cut(s)	62, 703
MmeI	TCCRAC	1 cut(s)	159
MroI	TCCGGA	2 cut(s)	234, 295
MroNI	GCCGGC	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	765
MspR9I	CCNGG	3 cut(s)	41, 153, 498
MunI	CAATTG	1 cut(s)	698
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	2 cut(s)	77, 339
MwoI	GCNNNNNNNGC	2 cut(s)	162, 256
NaeI	GCCGGC	1 cut(s)	384
NciI	CCSGG	2 cut(s)	153, 498
NdeII	GATC	5 cut(s)	189, 193, 331, 609, 619
NgoMIV	GCCGGC	1 cut(s)	382
NheI	GCTAGC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	662, 750
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	143, 506
NspV	TTCGAA	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	172
PagI	TCATGA	1 cut(s)	658
PaqCI	CACCTGC	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	99
PctI	GAATGC	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	10
PinAI	ACCGGT	1 cut(s)	358
Ple19I	CGATCG	1 cut(s)	192
PleI	GAGTC	2 cut(s)	62, 702
PpsI	GAGTC	2 cut(s)	62, 702
PshAI	GACNNNNGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	39
PspPI	GGNCC	5 cut(s)	123, 150, 177, 356, 562
PspXI	VCTCGAGB	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	765
RseI	CAYNNNNRTG	1 cut(s)	374
Rsr2I	CGGWCCG	1 cut(s)	356
RsrII	CGGWCCG	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	62
Sau3AI	GATC	5 cut(s)	189, 193, 331, 609, 619
Sau96I	GGNCC	5 cut(s)	123, 150, 177, 356, 562
SchI	GAGTC	2 cut(s)	62, 703
ScrFI	CCNGG	3 cut(s)	41, 153, 498
SduI	GDGCHC	1 cut(s)	678
SetI	ASST	9 cut(s)	90, 179, 252, 330, 482, 519, 707, 762, 767
Sfr274I	CTCGAG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	91
SgrDI	CGTCGACG	1 cut(s)	62
SinI	GGWCC	3 cut(s)	177, 356, 562
SlaI	CTCGAG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	172, 725
SmoI	CTYRAG	2 cut(s)	172, 725
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	2 cut(s)	502, 698
SseBI	AGGCCT	1 cut(s)	99
SspMI	CTAG	2 cut(s)	251, 492
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	3 cut(s)	39, 151, 496
TaqI	TCGA	7 cut(s)	63, 91, 173, 192, 405, 446, 736
TaqII	GACCGA	2 cut(s)	98, 260
TasI	AATT	2 cut(s)	502, 698
TauI	GCSGC	8 cut(s)	8, 47, 77, 120, 128, 265, 342, 382
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	2 cut(s)	152, 605
TseFI	GTSAC	2 cut(s)	143, 506
TseI	GCWGC	3 cut(s)	219, 259, 309
Tsp45I	GTSAC	2 cut(s)	143, 506
TspGWI	ACGGA	2 cut(s)	169, 338
TspRI	CASTG	2 cut(s)	152, 605
VpaK11BI	GGWCC	3 cut(s)	177, 356, 562
XagI	CCTNNNNNAGG	1 cut(s)	569
XhoI	CTCGAG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	251, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.