Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008860

Physical Location & Seq

Genomic Coordinates Reverse (-)

23517960 .. 23519831

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATAGATAAAGGCGGCCAACTTCTCGATTGGGGTAAGAGGCATAGTATTGCACTAGATATTACAAGAGCGGTTGAACACATCCGCAAATTCACTATTCACAACGTTGTCTATAGAGACTTGAAGCCCAACAATAATTTGCTTGGAGATGATTTTATTATCAAAGTTGCCGACTTTGACGCAACTGATAATTTCAACTCTGATAATCTGTTAGGGACATGTGGCTTCTCTTCAGTATTTAAAGGCAGATTGGAGGATAGGAGTACAATGTCTGTAAAGAAGTTGCAGAAGAACAAACATGTATTTAAAGGCAGATTGGAGGATGGAAGTACAATGTTTGTGAAGAAGGTGCAGAAGAATAAACATGGTATGTTGGACGCCGCTAGGGCTTTGAAAGCCTTTAAATATGTGATTGTAGTGTTCAATGAAACGAAACATACAATTGTGGTTGCGCTACTTGGATATTACGAAGATGATGAGCAACATCTCATGCTTGTATATGAGTATATGTCTCAAGGGACACTTGCTGATCATTTATTTAAAAAGACAAATGAAGGCGGCCAACTTTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

192

Amino Acids

21.85

Weight (kDa)

8.82

Isoelectric Point (pI)

20.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	14 - 68	3.8e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	70 - 184	2.7e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20110 FvH4_4g20150 FvH4_4g20151 FvH4_4g20160 FvH4_4g20410
rosa_chinensis	RchiOBHm_Chr4g0425881 RchiOBHm_Chr7g0220551
rosa_laevigata	RLG00000002218 RLG00000007333
rosa_multiflora	Rmu_ssc0000189.1_g000033 Rmu_ssc0000189.1_g000034 Rmu_ssc0000281.1_g000028 Rmu_ssc0000281.1_g000029 Rmu_ssc0000281.1_g000030 Rmu_ssc0000281.1_g000031 Rmu_ssc0000281.1_g000032
rosa_roxburghii	Rroxscaffold_5G00367920
rosa_samantha	Rh4BG270100 Rh4DG266500 Rh7AG335700 Rh7AG335800 Rh7CG353400 Rh7CG353500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	71
AciI	CCGC	5 cut(s)	15, 71, 85, 381, 558
AclI	AACGTT	1 cut(s)	105
AcoI	YGGCCR	2 cut(s)	16, 559
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	2 cut(s)	265, 331
AflIII	ACRYGT	2 cut(s)	218, 298
AgsI	TTSAA	5 cut(s)	77, 124, 196, 394, 424
Alw26I	GTCTC	2 cut(s)	111, 516
AoxI	GGCC	2 cut(s)	16, 559
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	2 cut(s)	111, 516
BfaI	CTAG	2 cut(s)	56, 384
BfmI	CTRYAG	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	386
BisI	GCNGC	3 cut(s)	16, 381, 559
BlsI	GCNGC	3 cut(s)	17, 382, 560
BpuEI	CTTGAG	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	378
BseGI	GGATG	2 cut(s)	81, 328
BsgI	GTGCAG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	18, 561
BslFI	GGGAC	2 cut(s)	229, 532
BsmAI	GTCTC	2 cut(s)	111, 516
BsmFI	GGGAC	2 cut(s)	229, 532
BsnI	GGCC	2 cut(s)	18, 561
Bsp143I	GATC	1 cut(s)	529
BspACI	CCGC	5 cut(s)	15, 71, 85, 381, 558
BspANI	GGCC	2 cut(s)	18, 561
BsrBI	CCGCTC	1 cut(s)	71
BssMI	GATC	1 cut(s)	529
BssNI	GRCGYC	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	81, 328
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	2 cut(s)	111, 516
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 395
BstNSI	RCATGY	2 cut(s)	222, 302
BstSFI	CTRYAG	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	18, 561
BtsCI	GGATG	2 cut(s)	81, 328
CfoI	GCGC	1 cut(s)	454
CseI	GACGC	2 cut(s)	188, 386
Csp6I	GTAC	2 cut(s)	264, 330
CviAII	CATG	4 cut(s)	219, 299, 365, 490
CviJI	RGCY	6 cut(s)	18, 127, 225, 389, 398, 561
CviKI_1	RGCY	6 cut(s)	18, 127, 225, 389, 398, 561
CviQI	GTAC	2 cut(s)	264, 330
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
DraI	TTTAAA	4 cut(s)	241, 307, 403, 541
EaeI	YGGCCR	2 cut(s)	16, 559
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	216
FaeI	CATG	4 cut(s)	222, 302, 368, 493
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	2 cut(s)	229, 532
FatI	CATG	4 cut(s)	218, 298, 364, 489
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	16, 381, 559
FokI	GGATG	2 cut(s)	68, 335
Fsp4HI	GCNGC	3 cut(s)	16, 381, 559
FspBI	CTAG	2 cut(s)	56, 384
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	3 cut(s)	16, 381, 559
HaeIII	GGCC	2 cut(s)	18, 561
HgaI	GACGC	2 cut(s)	188, 386
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	222, 302, 368, 493
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	340, 548
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	53, 286, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 395
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	222, 302, 368, 493
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	529
MaeI	CTAG	2 cut(s)	56, 384
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	531
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	1 cut(s)	529
MboII	GAAGA	5 cut(s)	222, 301, 355, 367, 482
MfeI	CAATTG	1 cut(s)	441
MluCI	AATT	4 cut(s)	89, 136, 190, 441
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	3 cut(s)	33, 247, 313
MseI	TTAA	4 cut(s)	240, 306, 402, 540
MunI	CAATTG	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	386, 395
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	4 cut(s)	222, 302, 368, 493
NspI	RCATGY	2 cut(s)	222, 302
PciI	ACATGT	2 cut(s)	218, 298
PkrI	GCNGC	3 cut(s)	17, 382, 560
PscI	ACATGT	2 cut(s)	218, 298
Psp1406I	AACGTT	1 cut(s)	105
RsaI	GTAC	2 cut(s)	265, 331
RsaNI	GTAC	2 cut(s)	264, 330
SaqAI	TTAA	4 cut(s)	240, 306, 402, 540
SatI	GCNGC	3 cut(s)	16, 381, 559
Sau3AI	GATC	1 cut(s)	529
SetI	ASST	2 cut(s)	108, 351
SfcI	CTRYAG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	4 cut(s)	89, 136, 190, 441
SsiI	CCGC	5 cut(s)	15, 71, 85, 381, 558
SspMI	CTAG	2 cut(s)	56, 384
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	27, 570
TasI	AATT	4 cut(s)	89, 136, 190, 441
TatI	WGTACW	2 cut(s)	263, 329
TauI	GCSGC	3 cut(s)	18, 383, 561
Tru1I	TTAA	4 cut(s)	240, 306, 402, 540
Tru9I	TTAA	4 cut(s)	240, 306, 402, 540
TspDTI	ATGAA	2 cut(s)	441, 567
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	2 cut(s)	222, 302
XspI	CTAG	2 cut(s)	56, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.