Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Forward (+)

28539844 .. 28541402

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAGTCGAATAGCAGCTTATCGCTTTCTGGATCCAGTCTTGCTGCTGTTGAATCCTTATCCATGCCTCTTTTCCAGGAGGTTGTTCTCTCGTCTGATATACGATGTTCTGGATGTCAAAGCAGACTTGCTGACATGATGTCCAAAATGGGTGATATAGAGTCGGTTGTGGTGAGCGCTTCGGAGAAGAAGGTTACAATCATATGCAGATATCCAAGTACTGCAGCAGCCAAGGTGCCAGATCGGCTAGTTCCTGCTGTACACAGGAGTCCTCTCAAAAAATTCGCCTTGATTAAACGCATACTTCGTTCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

106

Amino Acids

11.29

Weight (kDa)

9.78

Isoelectric Point (pI)

66.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AclWI	GGATC	2 cut(s)	27, 40
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	2 cut(s)	220, 261
AfeI	AGCGCT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	53
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
AlwI	GGATC	2 cut(s)	27, 40
Aor51HI	AGCGCT	1 cut(s)	178
ApeKI	GCWGC	4 cut(s)	15, 44, 224, 227
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	164, 184
BamHI	GGATCC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	235
BbvI	GCAGC	4 cut(s)	27, 31, 236, 239
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	4 cut(s)	16, 45, 225, 228
BlsI	GCNGC	4 cut(s)	17, 46, 226, 229
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	77
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	34, 237
BmrFI	CCNGG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	27, 31, 236, 239
BshNI	GGYRCC	1 cut(s)	235
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	32, 241
BspLI	GGNNCC	2 cut(s)	34, 237
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	2 cut(s)	27, 40
BspT107I	GGYRCC	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	32, 241
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	35, 244
BstMBI	GATC	2 cut(s)	32, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	27, 31, 236, 239
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	219, 260
CviAII	CATG	2 cut(s)	64, 136
CviJI	RGCY	3 cut(s)	18, 230, 247
CviKI_1	RGCY	3 cut(s)	18, 230, 247
CviQI	GTAC	2 cut(s)	219, 260
DpnI	GATC	2 cut(s)	34, 243
DpnII	GATC	2 cut(s)	32, 241
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	212
Eco47III	AGCGCT	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	75
EcoRV	GATATC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	67, 139
FaiI	YATR	7 cut(s)	65, 101, 137, 158, 203, 205, 302
FatI	CATG	2 cut(s)	63, 135
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	4 cut(s)	16, 45, 225, 228
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	4 cut(s)	16, 45, 225, 228
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	16, 45, 225, 228
HaeII	RGCGCY	1 cut(s)	180
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	67, 139
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	53, 161, 268
HphI	GGTGA	2 cut(s)	164, 184
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	97, 184
Hpy188III	TCNNGA	3 cut(s)	30, 111, 315
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	207, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	67, 139
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	32, 241
LpnPI	CCDG	8 cut(s)	15, 49, 62, 89, 96, 250, 252, 267
Lsp1109I	GCAGC	4 cut(s)	27, 31, 236, 239
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	34, 243
MboI	GATC	2 cut(s)	32, 241
MboII	GAAGA	2 cut(s)	199, 303
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	170, 277
MnlI	CCTC	3 cut(s)	73, 78, 282
MseI	TTAA	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	2 cut(s)	32, 241
NlaIII	CATG	2 cut(s)	67, 139
NlaIV	GGNNCC	2 cut(s)	34, 237
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	17, 46, 226, 229
PleI	GAGTC	2 cut(s)	169, 276
PpsI	GAGTC	2 cut(s)	169, 276
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	34, 237
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	2 cut(s)	220, 261
RsaNI	GTAC	2 cut(s)	219, 260
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	16, 45, 225, 228
Sau3AI	GATC	2 cut(s)	32, 241
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	2 cut(s)	170, 277
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	4 cut(s)	20, 84, 195, 237
SfcI	CTRYAG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	281
TatI	WGTACW	2 cut(s)	218, 259
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	4 cut(s)	15, 44, 224, 227
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	281
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.