Rmu_sc0001940.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001940.1
OG0002504
Physical Location & Seq
Forward (+)
98551 .. 100485
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001940.1_g000026.1.cds

Sequence Viewer

Length: 531 bp
atgaagtcgaataccagcttagcgcttcctggacccagtctcgcttctgtcgaatccttatccatgcctgtttttcaggaagttgttctcgcgtctgatatacgatgtactggatgtcaaaggagactagctgacatgatctccaaattgggtgatatagagtctgttgtggtgagcgcatcggagaagaaggttacacttgtatgtagatatccaagtactgcagcagccaaggtgccaagtcggctagttcccgcgtactgttgcatggtgatgcggctcaatgttgattgcaatggatgtgttaggaaagtaaggagaatactactcaacatgaaagctatagagacacatctgattgagaagcagcaatgcagggttagtgtatgtgggagatttataccagcagatgtggcaataaagttgagaaaaaagatgaaccgcagagtcgaaattctggaaatccaagagtttgatgaaactactactgaacagacggaccaaaggcctatgattactgcagcctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.62

Weight (kDa)

9.15

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 2 cut(s) 92, 257
AciI CCGC 3 cut(s) 255, 277, 442
AcsI RAATTY 1 cut(s) 453
AfaI GTAC 3 cut(s) 109, 220, 260
AfeI AGCGCT 1 cut(s) 24
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 3 cut(s) 18, 131, 341
AluI AGCT 3 cut(s) 18, 131, 341
Alw26I GTCTC 3 cut(s) 44, 118, 341
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 506
ApeKI GCWGC 4 cut(s) 224, 227, 367, 521
ApoI RAATTY 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 2 cut(s) 25, 179
AspS9I GGNCC 2 cut(s) 32, 499
AsuHPI GGTGA 3 cut(s) 164, 184, 283
AvaII GGWCC 2 cut(s) 32, 499
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 3 cut(s) 236, 239, 379
BciT130I CCWGG 1 cut(s) 30
BcoDI GTCTC 3 cut(s) 44, 118, 341
BfaI CTAG 2 cut(s) 128, 248
BfmI CTRYAG 3 cut(s) 222, 342, 519
BfoI RGCGCY 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 244
BisI GCNGC 5 cut(s) 225, 228, 278, 368, 522
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 5 cut(s) 226, 229, 279, 369, 523
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 2 cut(s) 32, 499
BmgT120I GGNCC 2 cut(s) 32, 499
BmiI GGNNCC 2 cut(s) 34, 237
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 2 cut(s) 188, 264
BmuI ACTGGG 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 2 cut(s) 36, 115
Bse3DI GCAATG 2 cut(s) 301, 377
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 119, 305
BseMI GCAATG 2 cut(s) 301, 377
BseNI ACTGG 2 cut(s) 36, 115
BseXI GCAGC 3 cut(s) 236, 239, 379
Bsh1236I CGCG 2 cut(s) 92, 257
BshFI GGCC 1 cut(s) 508
BshNI GGYRCC 1 cut(s) 235
BsmAI GTCTC 3 cut(s) 44, 118, 341
BsnI GGCC 1 cut(s) 508
Bsp143I GATC 1 cut(s) 138
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 3 cut(s) 255, 277, 442
BspANI GGCC 1 cut(s) 508
BspFNI CGCG 2 cut(s) 92, 257
BspLI GGNNCC 2 cut(s) 34, 237
BspMAI CTGCAG 2 cut(s) 226, 523
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 301, 377
BsrI ACTGG 2 cut(s) 36, 115
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 19
BstF5I GGATG 2 cut(s) 119, 305
BstFNI CGCG 2 cut(s) 92, 257
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 179
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 3 cut(s) 44, 118, 341
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 244, 413
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 3 cut(s) 222, 342, 519
BstUI CGCG 2 cut(s) 92, 257
BstV1I GCAGC 3 cut(s) 236, 239, 379
BsuRI GGCC 1 cut(s) 508
BtsCI GGATG 2 cut(s) 119, 305
CfoI GCGC 2 cut(s) 25, 179
Cfr13I GGNCC 2 cut(s) 32, 499
CseI GACGC 1 cut(s) 81
Csp6I GTAC 3 cut(s) 108, 219, 259
CviAII CATG 4 cut(s) 64, 136, 268, 334
CviJI RGCY 8 cut(s) 18, 131, 230, 247, 280, 341, 508, 524
CviKI_1 RGCY 8 cut(s) 18, 131, 230, 247, 280, 341, 508, 524
CviQI GTAC 3 cut(s) 108, 219, 259
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 231
Eco147I AGGCCT 1 cut(s) 508
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 32, 499
Eco47III AGCGCT 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 28
EcoRV GATATC 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 4 cut(s) 67, 139, 271, 337
FatI CATG 4 cut(s) 63, 135, 267, 333
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 5 cut(s) 225, 228, 278, 368, 522
FokI GGATG 2 cut(s) 126, 312
Fsp4HI GCNGC 5 cut(s) 225, 228, 278, 368, 522
FspBI CTAG 2 cut(s) 128, 248
GlaI GCGC 2 cut(s) 24, 178
GluI GCNGC 5 cut(s) 225, 228, 278, 368, 522
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 508
HgaI GACGC 1 cut(s) 81
HhaI GCGC 2 cut(s) 25, 179
Hin1II CATG 4 cut(s) 67, 139, 271, 337
Hin6I GCGC 2 cut(s) 23, 177
HinP1I GCGC 2 cut(s) 23, 177
HinfI GANTC 3 cut(s) 53, 161, 447
HphI GGTGA 3 cut(s) 164, 184, 283
Hpy188I TCNGA 3 cut(s) 97, 184, 357
Hpy188III TCNNGA 2 cut(s) 77, 458
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 5 cut(s) 224, 267, 294, 375, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 413
HpyF3I CTNAG 1 cut(s) 19
Hsp92II CATG 4 cut(s) 67, 139, 271, 337
HspAI GCGC 2 cut(s) 23, 177
Kzo9I GATC 1 cut(s) 138
Lsp1109I GCAGC 3 cut(s) 236, 239, 379
LweI GCATC 2 cut(s) 188, 264
MaeI CTAG 2 cut(s) 128, 248
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 199
MluCI AATT 2 cut(s) 146, 453
MlyI GAGTC 2 cut(s) 170, 456
MroXI GAANNNNTTC 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 202, 272
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 2 cut(s) 92, 257
MwoI GCNNNNNNNGC 2 cut(s) 244, 413
NdeII GATC 1 cut(s) 138
NlaIII CATG 4 cut(s) 67, 139, 271, 337
NlaIV GGNNCC 2 cut(s) 34, 237
PceI AGGCCT 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 5 cut(s) 226, 229, 279, 369, 523
PleI GAGTC 2 cut(s) 169, 455
PpsI GAGTC 2 cut(s) 169, 455
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 34, 237
PspPI GGNCC 2 cut(s) 32, 499
PstI CTGCAG 2 cut(s) 226, 523
PsyI GACNNNGTC 1 cut(s) 36
RsaI GTAC 3 cut(s) 109, 220, 260
RsaNI GTAC 3 cut(s) 108, 219, 259
RseI CAYNNNNRTG 2 cut(s) 202, 272
SatI GCNGC 5 cut(s) 225, 228, 278, 368, 522
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 32, 499
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 2 cut(s) 170, 456
ScrFI CCNGG 1 cut(s) 30
SetI ASST 5 cut(s) 20, 133, 195, 237, 343
SfaNI GCATC 2 cut(s) 188, 264
SfcI CTRYAG 3 cut(s) 222, 342, 519
SinI GGWCC 2 cut(s) 32, 499
SmiMI CAYNNNNRTG 2 cut(s) 202, 272
Sse9I AATT 2 cut(s) 146, 453
SseBI AGGCCT 1 cut(s) 508
SsiI CCGC 3 cut(s) 255, 277, 442
SspMI CTAG 2 cut(s) 128, 248
StuI AGGCCT 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 3 cut(s) 8, 51, 450
TasI AATT 2 cut(s) 146, 453
TatI WGTACW 2 cut(s) 107, 218
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 1 cut(s) 53
TseI GCWGC 4 cut(s) 224, 227, 367, 521
TspDTI ATGAA 4 cut(s) 17, 350, 452, 492
TspGWI ACGGA 1 cut(s) 512
Tth111I GACNNNGTC 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 32, 499
XapI RAATTY 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 2 cut(s) 128, 248
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.