Rh4DG343500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002504
Physical Location & Seq
Forward (+)
56596589 .. 56598190
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG343500.1

Sequence Viewer

Length: 339 bp
ATGAAGTCGAATACCAGCTTAGCGCTTCCTGGACCCAGTCTCGCTTCTGTCGAATCCTTATCCATGCCTGTTTTCCAGGAAGTTGTTCTCGCGTCTGATATACGATGTACCGGATGTCAAAGGAGACTTGCTGACATGATCTCCAAATTGGGTGCAGATATTGAGTCTGTTGTGGTGAGCGCATCGGAGAAGAAGGTTACACTTGTATGTAGATATCCAAGTACTGCAGCAGCCAAGGTGCCAAGTCGGCTAGTTCCCGCGTCATCAGACCAACCAAAAATTGATCTCAGCTCTTTGGCAACTCCAACTTCATGGCAGGAAAGTACTGTTGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

112

Amino Acids

11.85

Weight (kDa)

7.69

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccII CGCG 2 cut(s) 92, 260
AciI CCGC 1 cut(s) 258
AfaI GTAC 3 cut(s) 109, 223, 325
AfeI AGCGCT 1 cut(s) 24
AjnI CCWGG 2 cut(s) 28, 75
AluBI AGCT 2 cut(s) 18, 291
AluI AGCT 2 cut(s) 18, 291
Alw26I GTCTC 2 cut(s) 44, 118
Aor51HI AGCGCT 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 227, 230
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 2 cut(s) 25, 182
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 239, 242
BciT130I CCWGG 2 cut(s) 30, 77
BcoDI GTCTC 2 cut(s) 44, 118
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 247
BisI GCNGC 2 cut(s) 228, 231
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 2 cut(s) 229, 232
BmcAI AGTACT 2 cut(s) 223, 325
Bme1390I CCNGG 2 cut(s) 30, 77
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 34, 240
BmrFI CCNGG 2 cut(s) 30, 77
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 30, 77
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 239, 242
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 92, 260
BshNI GGYRCC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 44, 118
Bsp143I GATC 2 cut(s) 138, 283
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 2 cut(s) 92, 260
BspLI GGNNCC 2 cut(s) 34, 240
BspMAI CTGCAG 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 138, 283
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 30, 77
Bst4CI ACNGT 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 19, 287
BstF5I GGATG 1 cut(s) 119
BstFNI CGCG 2 cut(s) 92, 260
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 182
BstKTI GATC 2 cut(s) 141, 286
BstMAI GTCTC 2 cut(s) 44, 118
BstMBI GATC 2 cut(s) 138, 283
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 2 cut(s) 30, 77
BstSCI CCNGG 2 cut(s) 28, 75
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 2 cut(s) 92, 260
BstV1I GCAGC 2 cut(s) 239, 242
BstXI CCANNNNNNTGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 119
CfoI GCGC 2 cut(s) 25, 182
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 2 cut(s) 81, 249
Csp6I GTAC 3 cut(s) 108, 222, 324
CviAII CATG 4 cut(s) 64, 136, 312, 333
CviJI RGCY 4 cut(s) 18, 233, 250, 291
CviKI_1 RGCY 4 cut(s) 18, 233, 250, 291
CviQI GTAC 3 cut(s) 108, 222, 324
DdeI CTNAG 2 cut(s) 19, 287
DpnI GATC 2 cut(s) 140, 285
DpnII GATC 2 cut(s) 138, 283
Eco130I CCWWGG 1 cut(s) 234
Eco32I GATATC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 32
Eco47III AGCGCT 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 28, 75
EcoRV GATATC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 4 cut(s) 67, 139, 315, 336
FaiI YATR 6 cut(s) 65, 101, 137, 208, 313, 334
FatI CATG 4 cut(s) 63, 135, 311, 332
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 228, 231
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 228, 231
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 24, 181
GluI GCNGC 2 cut(s) 228, 231
HaeII RGCGCY 1 cut(s) 26
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 81, 249
HhaI GCGC 2 cut(s) 25, 182
Hin1II CATG 4 cut(s) 67, 139, 315, 336
Hin6I GCGC 2 cut(s) 23, 180
HinP1I GCGC 2 cut(s) 23, 180
HinfI GANTC 2 cut(s) 53, 164
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 97, 187, 268
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 3 cut(s) 155, 227, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 19, 287
Hsp92II CATG 4 cut(s) 67, 139, 315, 336
HspAI GCGC 2 cut(s) 23, 180
Kzo9I GATC 2 cut(s) 138, 283
LpnPI CCDG 9 cut(s) 15, 28, 42, 49, 62, 81, 89, 124, 302
Lsp1109I GCAGC 2 cut(s) 239, 242
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 140, 285
MboI GATC 2 cut(s) 138, 283
MboII GAAGA 1 cut(s) 202
MluCI AATT 2 cut(s) 146, 279
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 205
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 30, 77
MvaI CCWGG 2 cut(s) 30, 77
MvnI CGCG 2 cut(s) 92, 260
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 2 cut(s) 138, 283
NlaIII CATG 4 cut(s) 67, 139, 315, 336
NlaIV GGNNCC 2 cut(s) 34, 240
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 36
PfoI TCCNGGA 2 cut(s) 28, 75
PkrI GCNGC 2 cut(s) 229, 232
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 28, 75
PspGI CCWGG 2 cut(s) 28, 75
PspN4I GGNNCC 2 cut(s) 34, 240
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 36
RsaI GTAC 3 cut(s) 109, 223, 325
RsaNI GTAC 3 cut(s) 108, 222, 324
RseI CAYNNNNRTG 1 cut(s) 205
SatI GCNGC 2 cut(s) 228, 231
Sau3AI GATC 2 cut(s) 138, 283
Sau96I GGNCC 1 cut(s) 32
ScaI AGTACT 2 cut(s) 223, 325
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 30, 77
SetI ASST 4 cut(s) 20, 198, 240, 293
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 205
Sse9I AATT 2 cut(s) 146, 279
SsiI CCGC 1 cut(s) 258
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 28, 75
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 2 cut(s) 8, 51
TasI AATT 2 cut(s) 146, 279
TatI WGTACW 2 cut(s) 221, 323
TfiI GAWTC 1 cut(s) 53
TseI GCWGC 2 cut(s) 227, 230
TspDTI ATGAA 2 cut(s) 17, 300
Tth111I GACNNNGTC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 2 cut(s) 223, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.