Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Reverse (-)

30654705 .. 30655351

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1225800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCTGATGCGAATCCATATGGACTGCAATGGTTGTTACAGAAAAGTAAGGAGAGCAATTCTTGATATGCGAGAGTTGGAGACTCATTTGATAGAGAAGAAGGAGTGCAGGGTGAGTGTGTGCGGCAGATTTATCCCACAGGACGTGGCGATCAAGATAAGGAAGAAGACGAATCGCAGGGTTGAGATACTAGAAATACAAGAGCTTATGGACAACAGTAACACCGCCACCAACGATCAAGAAAACCTTCAAGATCAGGCGCCGCATACGCCTTTGATCAGGCCTTGGGATAATGTCATATCATACCCTAACCAAGTTGAAACTTTTTGTATAGAATCACATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.63

Weight (kDa)

6.95

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	259
AciI	CCGC	3 cut(s)	123, 225, 263
AcyI	GRCGYC	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	251, 320
AjiI	CACGTC	1 cut(s)	145
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	263
BisI	GCNGC	2 cut(s)	124, 263
BlsI	GCNGC	2 cut(s)	125, 264
BmgBI	CACGTC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	150, 235, 253, 276
BspACI	CCGC	3 cut(s)	123, 225, 263
BspANI	GGCC	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	4 cut(s)	150, 235, 253, 276
BssNI	GRCGYC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	4 cut(s)	153, 238, 256, 279
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	4 cut(s)	150, 235, 253, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	262
CviJI	RGCY	2 cut(s)	205, 283
CviKI_1	RGCY	2 cut(s)	205, 283
DinI	GGCGCC	1 cut(s)	261
DpnI	GATC	4 cut(s)	152, 237, 255, 278
DpnII	GATC	4 cut(s)	150, 235, 253, 276
Eco130I	CCWWGG	1 cut(s)	284
Eco147I	AGGCCT	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	261
EheI	GGCGCC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	284
FaiI	YATR	8 cut(s)	18, 20, 68, 209, 267, 299, 304, 332
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FauNDI	CATATG	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	124, 263
Fsp4HI	GCNGC	2 cut(s)	124, 263
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	2 cut(s)	124, 263
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	4 cut(s)	12, 82, 172, 335
HphI	GGTGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	62, 154, 239, 251
HpyAV	CCTTC	2 cut(s)	94, 257
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	27, 108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	260
HspAI	GCGC	1 cut(s)	260
KasI	GGCGCC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	150, 235, 253, 276
LpnPI	CCDG	5 cut(s)	94, 125, 163, 242, 265
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	35, 218
MalI	GATC	4 cut(s)	152, 237, 255, 278
MboI	GATC	4 cut(s)	150, 235, 253, 276
MboII	GAAGA	3 cut(s)	109, 175, 178
MluCI	AATT	1 cut(s)	57
Mly113I	GGCGCC	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	268
NarI	GGCGCC	1 cut(s)	260
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	4 cut(s)	150, 235, 253, 276
NlaIV	GGNNCC	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	12, 172, 335
PkrI	GCNGC	2 cut(s)	125, 264
PleI	GAGTC	1 cut(s)	76
PluTI	GGCGCC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	2 cut(s)	124, 263
Sau3AI	GATC	4 cut(s)	150, 235, 253, 276
SchI	GAGTC	1 cut(s)	76
SetI	ASST	3 cut(s)	147, 207, 249
SfoI	GGCGCC	1 cut(s)	261
Sse9I	AATT	1 cut(s)	57
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	3 cut(s)	123, 225, 263
SspDI	GGCGCC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	147
TasI	AATT	1 cut(s)	57
TauI	GCSGC	2 cut(s)	126, 265
TfiI	GAWTC	3 cut(s)	12, 172, 335
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.