Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Reverse (-)

8749756 .. 8751704

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGTCGAATACCAGCTTAGCGCTTCCTGGACCCAGTCTCGCTTCTGTCGAATCCTTATCCATGCCTGTTTTCCAGGAAGTTGTTCTCGCGTCTGATATACGATGTACCGGATGTCAAAGGAGACTTGCTGACATGATCTCCAAATTGGGTGCAGATGTAGAGTCTGTTGTGGTGAGCGCATCGGAGAAGAAGGTTACACTTGTATGTAGATATCCAAGTACCGCAGCAGCCAAGGTGCCAAGTCGGCTAGTTCCCGCGCTCTTTGGCAACTCCAACTTCATGGCAGGAAAGTACTGTTGCATGGTGATGAGGCTCAATGTTGATTGCAATGGATGTGTTAGGAAAGTACGGAGAATACTACTCAACATGAAAGCTATAGAGACACATCTGATTGAGAAGCAGCAATGCAGGGTTAGTGTATGTGGGAGATTTATACCAGCAGATGTGGCAATAAAGTTGAGAAAAAAGATGAACCGCAGAGTCGAAATTCTGGAAATCCAAGAGTTTGATGAAACTACTACCGAACAGATGGACCAAAGGCCTATGATTACTGCAGCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.88

Weight (kDa)

9.25

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccII	CGCG	2 cut(s)	92, 260
AciI	CCGC	3 cut(s)	225, 258, 478
AcsI	RAATTY	1 cut(s)	489
AfaI	GTAC	4 cut(s)	109, 223, 296, 351
AfeI	AGCGCT	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	28, 75
AluBI	AGCT	2 cut(s)	18, 377
AluI	AGCT	2 cut(s)	18, 377
Alw26I	GTCTC	3 cut(s)	44, 118, 377
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	4 cut(s)	227, 230, 403, 557
ApoI	RAATTY	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	3 cut(s)	25, 182, 262
AspS9I	GGNCC	2 cut(s)	32, 535
AsuHPI	GGTGA	2 cut(s)	187, 319
AvaII	GGWCC	2 cut(s)	32, 535
BanI	GGYRCC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	239, 242, 415
BccI	CCATC	1 cut(s)	526
BciT130I	CCWGG	2 cut(s)	30, 77
BcoDI	GTCTC	3 cut(s)	44, 118, 377
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	2 cut(s)	378, 555
BfoI	RGCGCY	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	247
BisI	GCNGC	4 cut(s)	228, 231, 404, 558
BlpI	GCTNAGC	1 cut(s)	19
BlsI	GCNGC	4 cut(s)	229, 232, 405, 559
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	30, 77
Bme18I	GGWCC	2 cut(s)	32, 535
BmgT120I	GGNCC	2 cut(s)	32, 535
BmiI	GGNNCC	2 cut(s)	34, 240
BmrFI	CCNGG	2 cut(s)	30, 77
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	2 cut(s)	337, 413
BseBI	CCWGG	2 cut(s)	30, 77
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	119, 341
BseMI	GCAATG	2 cut(s)	337, 413
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	239, 242, 415
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	2 cut(s)	92, 260
BshFI	GGCC	1 cut(s)	544
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	111
BsmAI	GTCTC	3 cut(s)	44, 118, 377
BsnI	GGCC	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	138
Bsp1720I	GCTNAGC	1 cut(s)	19
BspACI	CCGC	3 cut(s)	225, 258, 478
BspANI	GGCC	1 cut(s)	544
BspFNI	CGCG	2 cut(s)	92, 260
BspLI	GGNNCC	2 cut(s)	34, 240
BspMAI	CTGCAG	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	337, 413
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	30, 77
Bst4CI	ACNGT	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	119, 341
BstFNI	CGCG	2 cut(s)	92, 260
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	3 cut(s)	25, 182, 262
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	3 cut(s)	44, 118, 377
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 449
BstNI	CCWGG	2 cut(s)	30, 77
BstSCI	CCNGG	2 cut(s)	28, 75
BstSFI	CTRYAG	2 cut(s)	378, 555
BstUI	CGCG	2 cut(s)	92, 260
BstV1I	GCAGC	3 cut(s)	239, 242, 415
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	119, 341
CfoI	GCGC	3 cut(s)	25, 182, 262
Cfr13I	GGNCC	2 cut(s)	32, 535
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	108, 222, 295, 350
CviAII	CATG	5 cut(s)	64, 136, 283, 304, 370
CviJI	RGCY	7 cut(s)	18, 233, 250, 316, 377, 544, 560
CviKI_1	RGCY	7 cut(s)	18, 233, 250, 316, 377, 544, 560
CviQI	GTAC	4 cut(s)	108, 222, 295, 350
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	544
Eco32I	GATATC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	32, 535
Eco47III	AGCGCT	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	28, 75
EcoRV	GATATC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	5 cut(s)	67, 139, 286, 307, 373
FatI	CATG	5 cut(s)	63, 135, 282, 303, 369
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	228, 231, 404, 558
FokI	GGATG	2 cut(s)	126, 348
Fsp4HI	GCNGC	4 cut(s)	228, 231, 404, 558
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	3 cut(s)	24, 181, 261
GluI	GCNGC	4 cut(s)	228, 231, 404, 558
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	3 cut(s)	25, 182, 262
Hin1II	CATG	5 cut(s)	67, 139, 286, 307, 373
Hin6I	GCGC	3 cut(s)	23, 180, 260
HinP1I	GCGC	3 cut(s)	23, 180, 260
HinfI	GANTC	3 cut(s)	53, 164, 483
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	187, 319
Hpy188I	TCNGA	3 cut(s)	97, 187, 393
Hpy188III	TCNNGA	1 cut(s)	494
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	155, 303, 330, 411, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 449
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	5 cut(s)	67, 139, 286, 307, 373
HspAI	GCGC	3 cut(s)	23, 180, 260
Kzo9I	GATC	1 cut(s)	138
Lsp1109I	GCAGC	3 cut(s)	239, 242, 415
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	202
MluCI	AATT	2 cut(s)	146, 489
MlyI	GAGTC	2 cut(s)	173, 492
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	205, 308
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	30, 77
MvaI	CCWGG	2 cut(s)	30, 77
MvnI	CGCG	2 cut(s)	92, 260
MwoI	GCNNNNNNNGC	2 cut(s)	247, 449
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	5 cut(s)	67, 139, 286, 307, 373
NlaIV	GGNNCC	2 cut(s)	34, 240
PceI	AGGCCT	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	36
PfoI	TCCNGGA	2 cut(s)	28, 75
PkrI	GCNGC	4 cut(s)	229, 232, 405, 559
PleI	GAGTC	2 cut(s)	172, 491
PpsI	GAGTC	2 cut(s)	172, 491
Psp6I	CCWGG	2 cut(s)	28, 75
PspGI	CCWGG	2 cut(s)	28, 75
PspN4I	GGNNCC	2 cut(s)	34, 240
PspPI	GGNCC	2 cut(s)	32, 535
PstI	CTGCAG	1 cut(s)	559
PsyI	GACNNNGTC	1 cut(s)	36
RsaI	GTAC	4 cut(s)	109, 223, 296, 351
RsaNI	GTAC	4 cut(s)	108, 222, 295, 350
RseI	CAYNNNNRTG	2 cut(s)	205, 308
SatI	GCNGC	4 cut(s)	228, 231, 404, 558
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	32, 535
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	2 cut(s)	173, 492
ScrFI	CCNGG	2 cut(s)	30, 77
SetI	ASST	4 cut(s)	20, 198, 240, 379
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	2 cut(s)	378, 555
SinI	GGWCC	2 cut(s)	32, 535
SmiMI	CAYNNNNRTG	2 cut(s)	205, 308
Sse9I	AATT	2 cut(s)	146, 489
SseBI	AGGCCT	1 cut(s)	544
SsiI	CCGC	3 cut(s)	225, 258, 478
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	544
StyD4I	CCNGG	2 cut(s)	28, 75
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	3 cut(s)	8, 51, 486
TasI	AATT	2 cut(s)	146, 489
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	53
TseI	GCWGC	4 cut(s)	227, 230, 403, 557
TspDTI	ATGAA	5 cut(s)	17, 271, 386, 488, 528
TspGWI	ACGGA	1 cut(s)	367
Tth111I	GACNNNGTC	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	32, 535
XapI	RAATTY	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.