Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Reverse (-)

45901591 .. 45903933

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

ATGAGTTGTGTCCGCACGGTTACATATTCTTTTATTTTGAATGGGGAACCAAGAGGTCGGATTATACCTTCTCGGGGCTTGAGGCAAGGAGATTCGATTTCACCTTATCTTTTTCTTCTTTGTGCGGAAGTGTTGTCAAGATGTTTATCACAGGCTGAGGATCGAGGTTTACTTCATGGTGTGGAAATCTGTTTGGGAGCCCCTAGCATTAGTCACTTGTTTTTCGCAGACGACTCCTTCATTTTTTTCAAAGCAGAAAGTGGTGATTGTGCTACATTGAGGAATCTTCTGCATGACTATGAGTACGCTTCTGGACAACAGGTAAATTACCAGAAGAGTTGTATTTCTTTCAGTAAGAATGTTGATATGACTGTACAGGAGATCTCTGCATCATTGGGTGTTATGAGGGTTGAAAAACATGACAAGTATCTTGGGTTACCGACAGAACTCAGTTACTCGAAAGAAGAGGCTTTTGGTTTTCTTAATGAGAAGATTCGGACTCGGACTCAAGGGTGGAGGGAGAAGACTCTTAGTGTTGCCGGAAAGGAAATCCTTATCAAGGCTGTGGCACAAGCAATTCCTTCTTATGTGATGAGTTGTTTTGAGCTACCAAAACATATATGTAATGAGATGCATAGACTGATGGCTCGATTTTGGTGGGGGGGGGGAAACGATACGGAGAGGAAGATCCATTGGGTTTCTTGGGAGAAGCTTTGTTGCCCTAAAAATGAAGGAGGCTTGGGTTTTCGGAACATGTATCCTTTTAATCTGGCACTCTTCGCCAAACAAGGTTGGCGGTTGATTCAAAATCCAAACTCTATTATTGCAAGACTTCTTAAAGCCAAATATTTTCCTAATTGCTCTTTTATGGAGGCTGAAGTCAAGGGGGGTGACTCCTACACCTGGAGAAGCATCATATCGGGGAGGGAAGTGTTGAAGAAAGGACTACGATTTCAGGTGGGTGATGGAAGTGGTATTTCGGTTTGGCAGGATCCCTGGATAGCGTTACCACTTTCTTTCAAACCTTTTTCTCCCATAATGGAAGGGACGGAGGACTTTATGGTGGCAGACCTCATAGATAGGGAGAATGGAGAATGGTTACTAGACTTGTTGGATGAACTTTTCACAAATGGGGAGGTTGAGAATATTGCTTCTATTCCATTAAGTCTCCGGGGCGCGGAAAACAGATTAATTTGGCATTTTGACAGGAGAGGTATTTACAATGTTAAAAGTGGCTACTATGTGTTTAACAAGGCACAAACTGCTTTGGAAAAGGCTACTTCTTCTATGGCTGTGGAGGGTGGAGCTTGGCGGCGGTATTGGCAGATGATATGGGGAGCTAATGTGCCTCCAAAGGTGAGAGTTTTTATGTGGAGGCTACTCAAAGAGATTTTGCCAACTAAGAGTGCTCTGGCTAAGAAGAAGATCCATATCCATGATTTACGTTGCATGTTCTGCATGGGGGATGTCGAAACAGGTACCCATCTTTTTAAAAATTACCCTGCTTTACTTTGTTTTTGGTTATATGGGCCCTTGAAGTTGAATGCCTTGGAGCACCCAACCACATGCATTAAAGAGTGGACGTTGGACATGCTAGATGAGTTGACCAATGATCATAGAGACTTCTTCTTTGTGGGCTTGTGGGCAATATGGAGGGAAAGAAATAAAATGGTCTGGAATGATGCTGCGTTCCAGCCTATGTTTCTAATTGATTGGGCTGTTCATTTTTTGAATGATTACCAAAAATATCATCCTAAAGCTGTGAAGAAAAAGAAGAGGCCTTTAACCAAATGGCAATGCCCACCTAGTGGTAGGCTGAAAATCAATGTGGTAGGGGCTTTTAGAGTGGATAATGGTTGTGGAGGCATTAGTGTAGTGGTCAGGAACGACGCTGGTATGGGTATTGCTGCTCTGGCTAGACCTTTTCTACATGCTCACTCAGTCCTAAATATGGAAGCTGAGGCATGTAGAGCCGGTCTTCTACTTGGTATTCACCAAGGTTGGTCTGAAATTGACATTGAAAGCGACTCTGCCATTCTGATTGCTGCGCTCAATAGTTCGAAGCAGGATTTCTCTGAGTCAGTTAGAATTTGTCATATTTACCGTGAAGCAAATGGTGTTGCTGATAGACTTGCGCACCTTGCTAGTTTGTTTGCTATTGATGATGTTTGGTTAGATGAGACTCCTGCTATTATTCAGGATGTTCTCTATGAGGATTATTGGAAGTGTTTTCCTGTAGCACGGGGTTCAGGTTTTATGTCCCCCCCCCGTTGCAAAATCATACTATTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

764

Amino Acids

87.02

Weight (kDa)

8.33

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	12 - 137	6.8e-08	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	430 - 507	7.2e-14	zinc-binding in reverse transcriptase
RVT_3	PF13456	609 - 713	1.6e-10	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2136
Acc65I	GGTACC	1 cut(s)	1478
AccB1I	GGYRCC	1 cut(s)	1478
AccB7I	CCANNNNNTGG	1 cut(s)	1808
AccII	CGCG	1 cut(s)	1178
AciI	CCGC	6 cut(s)	13, 125, 796, 1178, 1312, 1315
AclWI	GGATC	5 cut(s)	168, 682, 986, 999, 1420
AcsI	RAATTY	1 cut(s)	2088
AcuI	CTGAAG	1 cut(s)	897
AdeI	CACNNNGTG	1 cut(s)	1808
AfaI	GTAC	3 cut(s)	305, 375, 1480
AfiI	CCNNNNNNNGG	6 cut(s)	74, 559, 903, 1177, 1808, 1951
AflIII	ACRYGT	1 cut(s)	753
AjnI	CCWGG	2 cut(s)	902, 995
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	6 cut(s)	607, 712, 1307, 1340, 1760, 1958
AluI	AGCT	6 cut(s)	607, 712, 1307, 1340, 1760, 1958
Alw21I	GWGCWC	2 cut(s)	1411, 1557
Alw26I	GTCTC	3 cut(s)	1172, 1614, 2174
AlwI	GGATC	5 cut(s)	168, 682, 986, 999, 1420
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	2 cut(s)	1529, 1778
ApaI	GGGCCC	1 cut(s)	1533
ApeKI	GCWGC	3 cut(s)	1685, 1907, 2045
ApoI	RAATTY	1 cut(s)	2088
ArsI	GACNNNNNNTTYG	2 cut(s)	1613, 1645
AseI	ATTAAT	2 cut(s)	1190, 2288
Asp718I	GGTACC	1 cut(s)	1478
AspLEI	GCGC	3 cut(s)	1178, 2050, 2137
AspS9I	GGNCC	2 cut(s)	1529, 1530
AsuC2I	CCSGG	1 cut(s)	1172
AsuHPI	GGTGA	6 cut(s)	93, 275, 902, 974, 1369, 1985
AsuII	TTCGAA	1 cut(s)	2060
AvaI	CYCGRG	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	1533
BamHI	GGATCC	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	1478
BanII	GRGCYC	2 cut(s)	202, 1533
BbsI	GAAGAC	2 cut(s)	530, 1970
Bbv12I	GWGCWC	2 cut(s)	1411, 1557
BbvCI	CCTCAGC	2 cut(s)	156, 1959
BbvI	GCAGC	3 cut(s)	1672, 1894, 2032
BccI	CCATC	3 cut(s)	637, 959, 1491
BciT130I	CCWGG	2 cut(s)	904, 997
BciVI	GTATCC	1 cut(s)	768
BclI	TGATCA	1 cut(s)	1612
BcnI	CCSGG	1 cut(s)	1172
BcoDI	GTCTC	3 cut(s)	1172, 1614, 2174
BfaI	CTAG	6 cut(s)	204, 1103, 1595, 1806, 1917, 2145
BfmI	CTRYAG	1 cut(s)	2235
BfuI	GTATCC	1 cut(s)	768
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	4 cut(s)	1313, 1686, 1908, 2046
BlsI	GCNGC	4 cut(s)	1314, 1687, 1909, 2047
Bme1390I	CCNGG	3 cut(s)	904, 997, 1172
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	1529, 1530
BmiI	GGNNCC	5 cut(s)	48, 199, 993, 1480, 1531
BmrFI	CCNGG	3 cut(s)	904, 997, 1172
BmsI	GCATC	4 cut(s)	398, 621, 921, 1672
BpiI	GAAGAC	2 cut(s)	530, 1970
BpmI	CTGGAG	1 cut(s)	925
Bpu10I	CCTNAGC	2 cut(s)	156, 1959
Bpu14I	TTCGAA	1 cut(s)	2060
BpuEI	CTTGAG	2 cut(s)	100, 492
BpuMI	CCSGG	1 cut(s)	1172
BsaBI	GATNNNNATC	2 cut(s)	145, 1430
BsaJI	CCNNGG	4 cut(s)	995, 1171, 1548, 1996
BsaXI	ACNNNNNCTCC	2 cut(s)	1329, 1359
Bsc4I	CCNNNNNNNGG	6 cut(s)	74, 559, 903, 1177, 1808, 1951
Bse118I	RCCGGY	1 cut(s)	1973
Bse3DI	GCAATG	1 cut(s)	1802
Bse8I	GATNNNNATC	2 cut(s)	145, 1430
BseBI	CCWGG	2 cut(s)	904, 997
BseDI	CCNNGG	4 cut(s)	995, 1171, 1548, 1996
BseGI	GGATG	4 cut(s)	1120, 1471, 1750, 2206
BseJI	GATNNNNATC	2 cut(s)	145, 1430
BseLI	CCNNNNNNNGG	6 cut(s)	74, 559, 903, 1177, 1808, 1951
BseMI	GCAATG	1 cut(s)	1802
BseMII	CTCAG	5 cut(s)	147, 463, 1950, 1953, 2067
BseSI	GKGCMC	1 cut(s)	1533
BseXI	GCAGC	3 cut(s)	1672, 1894, 2032
Bsh1236I	CGCG	1 cut(s)	1178
BshFI	GGCC	2 cut(s)	1531, 1780
BshNI	GGYRCC	1 cut(s)	1478
BsiHKAI	GWGCWC	2 cut(s)	1411, 1557
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	540, 1171, 1974
BslFI	GGGAC	2 cut(s)	1060, 2245
BslI	CCNNNNNNNGG	6 cut(s)	74, 559, 903, 1177, 1808, 1951
BsmAI	GTCTC	3 cut(s)	1172, 1614, 2174
BsmFI	GGGAC	2 cut(s)	1060, 2245
BsmI	GAATGC	1 cut(s)	1549
BsnI	GGCC	2 cut(s)	1531, 1780
BsoBI	CYCGRG	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	2060
Bsp120I	GGGCCC	1 cut(s)	1529
Bsp1286I	GDGCHC	4 cut(s)	202, 1411, 1533, 1557
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	6 cut(s)	160, 381, 687, 991, 1425, 1612
BspACI	CCGC	6 cut(s)	13, 125, 796, 1178, 1312, 1315
BspANI	GGCC	2 cut(s)	1531, 1780
BspCNI	CTCAG	5 cut(s)	148, 462, 1951, 1952, 2068
BspFNI	CGCG	1 cut(s)	1178
BspLI	GGNNCC	5 cut(s)	48, 199, 993, 1480, 1531
BspPI	GGATC	5 cut(s)	168, 682, 986, 999, 1420
BspT104I	TTCGAA	1 cut(s)	2060
BspT107I	GGYRCC	1 cut(s)	1478
BsrDI	GCAATG	1 cut(s)	1802
BsrFI	RCCGGY	1 cut(s)	1973
BsrGI	TGTACA	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	1973
BssECI	CCNNGG	4 cut(s)	995, 1171, 1548, 1996
BssMI	GATC	6 cut(s)	160, 381, 687, 991, 1425, 1612
BssT1I	CCWWGG	2 cut(s)	1548, 1996
Bst2UI	CCWGG	2 cut(s)	904, 997
Bst4CI	ACNGT	3 cut(s)	19, 373, 2105
Bst6I	CTCTTC	4 cut(s)	329, 459, 782, 1769
BstAPI	GCANNNNNTGC	2 cut(s)	1262, 1455
BstAUI	TGTACA	1 cut(s)	373
BstBI	TTCGAA	1 cut(s)	2060
BstDEI	CTNAG	8 cut(s)	156, 449, 530, 1401, 1416, 1939, 1959, 2076
BstEII	GGTNACC	1 cut(s)	435
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	4 cut(s)	1120, 1471, 1750, 2206
BstFNI	CGCG	1 cut(s)	1178
BstHHI	GCGC	3 cut(s)	1178, 2050, 2137
BstKTI	GATC	6 cut(s)	163, 384, 690, 994, 1428, 1615
BstMAI	GTCTC	3 cut(s)	1172, 1614, 2174
BstMBI	GATC	6 cut(s)	160, 381, 687, 991, 1425, 1612
BstMWI	GCNNNNNNNGC	7 cut(s)	779, 1262, 1321, 1455, 1913, 1970, 2141
BstNI	CCWGG	2 cut(s)	904, 997
BstNSI	RCATGY	6 cut(s)	757, 1453, 1569, 1594, 1934, 1968
BstPI	GGTNACC	1 cut(s)	435
BstSCI	CCNGG	3 cut(s)	902, 995, 1170
BstSFI	CTRYAG	1 cut(s)	2235
BstSLI	GKGCMC	1 cut(s)	1533
BstUI	CGCG	1 cut(s)	1178
BstV1I	GCAGC	3 cut(s)	1672, 1894, 2032
BstV2I	GAAGAC	2 cut(s)	530, 1970
BstX2I	RGATCY	4 cut(s)	381, 687, 991, 1425
BstYI	RGATCY	4 cut(s)	381, 687, 991, 1425
BsuI	GTATCC	1 cut(s)	768
BsuRI	GGCC	2 cut(s)	1531, 1780
BtsCI	GGATG	4 cut(s)	1120, 1471, 1750, 2206
CfoI	GCGC	3 cut(s)	1178, 2050, 2137
Cfr10I	RCCGGY	1 cut(s)	1973
Cfr13I	GGNCC	2 cut(s)	1529, 1530
CseI	GACGC	1 cut(s)	1898
Csp6I	GTAC	3 cut(s)	304, 374, 1479
CviQI	GTAC	3 cut(s)	304, 374, 1479
DdeI	CTNAG	8 cut(s)	156, 449, 530, 1401, 1416, 1939, 1959, 2076
DpnI	GATC	6 cut(s)	162, 383, 689, 993, 1427, 1614
DpnII	GATC	6 cut(s)	160, 381, 687, 991, 1425, 1612
DraI	TTTAAA	1 cut(s)	1492
DraIII	CACNNNGTG	1 cut(s)	1808
Eam1104I	CTCTTC	4 cut(s)	329, 459, 782, 1769
EarI	CTCTTC	4 cut(s)	329, 459, 782, 1769
Eco130I	CCWWGG	2 cut(s)	1548, 1996
Eco147I	AGGCCT	1 cut(s)	1780
Eco24I	GRGCYC	2 cut(s)	202, 1533
Eco57I	CTGAAG	1 cut(s)	897
Eco88I	CYCGRG	1 cut(s)	72
Eco91I	GGTNACC	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	1530
EcoO65I	GGTNACC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	902, 995
EcoT14I	CCWWGG	2 cut(s)	1548, 1996
EcoT22I	ATGCAT	2 cut(s)	636, 1571
EcoT38I	GRGCYC	2 cut(s)	202, 1533
ErhI	CCWWGG	2 cut(s)	1548, 1996
FaqI	GGGAC	2 cut(s)	1060, 2245
FbaI	TGATCA	1 cut(s)	1612
Fnu4HI	GCNGC	4 cut(s)	1313, 1686, 1908, 2046
FokI	GGATG	4 cut(s)	1127, 1478, 1737, 2213
FriOI	GRGCYC	2 cut(s)	202, 1533
Fsp4HI	GCNGC	4 cut(s)	1313, 1686, 1908, 2046
FspBI	CTAG	6 cut(s)	204, 1103, 1595, 1806, 1917, 2145
FspI	TGCGCA	1 cut(s)	2136
GlaI	GCGC	3 cut(s)	1177, 2049, 2136
GluI	GCNGC	4 cut(s)	1313, 1686, 1908, 2046
GsuI	CTGGAG	1 cut(s)	925
HaeIII	GGCC	2 cut(s)	1531, 1780
HapII	CCGG	3 cut(s)	540, 1171, 1974
HgaI	GACGC	1 cut(s)	1898
HhaI	GCGC	3 cut(s)	1178, 2050, 2137
Hin6I	GCGC	3 cut(s)	1176, 2048, 2135
HinP1I	GCGC	3 cut(s)	1176, 2048, 2135
HincII	GTYRAC	1 cut(s)	1605
HindII	GTYRAC	1 cut(s)	1605
HindIII	AAGCTT	1 cut(s)	710
HpaII	CCGG	3 cut(s)	540, 1171, 1974
HphI	GGTGA	6 cut(s)	93, 275, 902, 974, 1369, 1985
Hpy166II	GTNNAC	3 cut(s)	170, 1581, 1605
Hpy188I	TCNGA	7 cut(s)	60, 498, 504, 750, 2008, 2040, 2077
Hpy188III	TCNNGA	5 cut(s)	138, 312, 1675, 1882, 2198
Hpy8I	GTNNAC	3 cut(s)	170, 1581, 1605
Hpy99I	CGWCG	1 cut(s)	1892
HpyAV	CCTTC	5 cut(s)	78, 247, 591, 725, 1037
HpyCH4III	ACNGT	3 cut(s)	19, 373, 2105
HpyCH4IV	ACGT	2 cut(s)	1444, 1583
HpyCH4V	TGCA	8 cut(s)	292, 389, 634, 827, 1449, 1458, 1569, 2274
HpyF10VI	GCNNNNNNNGC	7 cut(s)	779, 1262, 1321, 1455, 1913, 1970, 2141
HpyF3I	CTNAG	8 cut(s)	156, 449, 530, 1401, 1416, 1939, 1959, 2076
HpySE526I	ACGT	2 cut(s)	1444, 1583
HspAI	GCGC	3 cut(s)	1176, 2048, 2135
KpnI	GGTACC	1 cut(s)	1482
Ksp22I	TGATCA	1 cut(s)	1612
Kzo9I	GATC	6 cut(s)	160, 381, 687, 991, 1425, 1612
LmnI	GCTCC	4 cut(s)	197, 1304, 1337, 1552
Lsp1109I	GCAGC	3 cut(s)	1672, 1894, 2032
LweI	GCATC	4 cut(s)	398, 621, 921, 1672
MaeI	CTAG	6 cut(s)	204, 1103, 1595, 1806, 1917, 2145
MaeII	ACGT	2 cut(s)	1444, 1583
MaeIII	GTNAC	7 cut(s)	19, 212, 435, 452, 890, 1005, 1098
MalI	GATC	6 cut(s)	162, 383, 689, 993, 1427, 1614
MboI	GATC	6 cut(s)	160, 381, 687, 991, 1425, 1612
MflI	RGATCY	4 cut(s)	381, 687, 991, 1425
MhlI	GDGCHC	4 cut(s)	202, 1411, 1533, 1557
MluCI	AATT	8 cut(s)	325, 576, 856, 1191, 1495, 1707, 2010, 2088
MlyI	GAGTC	8 cut(s)	227, 493, 499, 520, 887, 2021, 2087, 2176
MmeI	TCCRAC	3 cut(s)	38, 1092, 1566
Mph1103I	ATGCAT	2 cut(s)	636, 1571
MslI	CAYNNNNRTG	2 cut(s)	297, 1434
MspI	CCGG	3 cut(s)	540, 1171, 1974
MspR9I	CCNGG	3 cut(s)	904, 997, 1172
Mva1269I	GAATGC	1 cut(s)	1549
MvaI	CCWGG	2 cut(s)	904, 997
MvnI	CGCG	1 cut(s)	1178
MwoI	GCNNNNNNNGC	7 cut(s)	779, 1262, 1321, 1455, 1913, 1970, 2141
NciI	CCSGG	1 cut(s)	1172
NdeII	GATC	6 cut(s)	160, 381, 687, 991, 1425, 1612
NlaIV	GGNNCC	5 cut(s)	48, 199, 993, 1480, 1531
NmuCI	GTSAC	2 cut(s)	212, 890
NsbI	TGCGCA	1 cut(s)	2136
NsiI	ATGCAT	2 cut(s)	636, 1571
NspI	RCATGY	6 cut(s)	757, 1453, 1569, 1594, 1934, 1968
NspV	TTCGAA	1 cut(s)	2060
PceI	AGGCCT	1 cut(s)	1780
PciI	ACATGT	1 cut(s)	753
PctI	GAATGC	1 cut(s)	1549
PfeI	GAWTC	4 cut(s)	92, 283, 493, 802
PflMI	CCANNNNNTGG	1 cut(s)	1808
PkrI	GCNGC	4 cut(s)	1314, 1687, 1909, 2047
PleI	GAGTC	8 cut(s)	227, 493, 499, 520, 887, 2021, 2086, 2176
PpsI	GAGTC	8 cut(s)	227, 493, 499, 520, 887, 2021, 2086, 2176
PscI	ACATGT	1 cut(s)	753
PshBI	ATTAAT	2 cut(s)	1190, 2288
Psp6I	CCWGG	2 cut(s)	902, 995
PspEI	GGTNACC	1 cut(s)	435
PspGI	CCWGG	2 cut(s)	902, 995
PspN4I	GGNNCC	5 cut(s)	48, 199, 993, 1480, 1531
PspOMI	GGGCCC	1 cut(s)	1529
PspPI	GGNCC	2 cut(s)	1529, 1530
PsuI	RGATCY	4 cut(s)	381, 687, 991, 1425
RsaI	GTAC	3 cut(s)	305, 375, 1480
RsaNI	GTAC	3 cut(s)	304, 374, 1479
RseI	CAYNNNNRTG	2 cut(s)	297, 1434
SatI	GCNGC	4 cut(s)	1313, 1686, 1908, 2046
Sau3AI	GATC	6 cut(s)	160, 381, 687, 991, 1425, 1612
Sau96I	GGNCC	2 cut(s)	1529, 1530
SchI	GAGTC	8 cut(s)	227, 493, 499, 520, 887, 2021, 2087, 2176
ScrFI	CCNGG	3 cut(s)	904, 997, 1172
SduI	GDGCHC	4 cut(s)	202, 1411, 1533, 1557
SfaNI	GCATC	4 cut(s)	398, 621, 921, 1672
SfcI	CTRYAG	1 cut(s)	2235
SfuI	TTCGAA	1 cut(s)	2060
SmiMI	CAYNNNNRTG	2 cut(s)	297, 1434
SmlI	CTYRAG	2 cut(s)	79, 507
SmoI	CTYRAG	2 cut(s)	79, 507
Sse9I	AATT	8 cut(s)	325, 576, 856, 1191, 1495, 1707, 2010, 2088
SseBI	AGGCCT	1 cut(s)	1780
SsiI	CCGC	6 cut(s)	13, 125, 796, 1178, 1312, 1315
SspI	AATATT	2 cut(s)	848, 1147
SspMI	CTAG	6 cut(s)	204, 1103, 1595, 1806, 1917, 2145
StuI	AGGCCT	1 cut(s)	1780
StyD4I	CCNGG	3 cut(s)	902, 995, 1170
StyI	CCWWGG	2 cut(s)	1548, 1996
TaaI	ACNGT	3 cut(s)	19, 373, 2105
TaiI	ACGT	2 cut(s)	1447, 1586
TaqI	TCGA	6 cut(s)	95, 163, 458, 649, 1470, 2060
TasI	AATT	8 cut(s)	325, 576, 856, 1191, 1495, 1707, 2010, 2088
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	1315
TfiI	GAWTC	4 cut(s)	92, 283, 493, 802
TseFI	GTSAC	2 cut(s)	212, 890
TseI	GCWGC	3 cut(s)	1685, 1907, 2045
Tsp45I	GTSAC	2 cut(s)	212, 890
TspDTI	ATGAA	5 cut(s)	164, 229, 744, 1131, 1712
TspGWI	ACGGA	2 cut(s)	692, 1064
Van91I	CCANNNNNTGG	1 cut(s)	1808
VspI	ATTAAT	2 cut(s)	1190, 2288
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	2088
XceI	RCATGY	6 cut(s)	757, 1453, 1569, 1594, 1934, 1968
XspI	CTAG	6 cut(s)	204, 1103, 1595, 1806, 1917, 2145
Zsp2I	ATGCAT	2 cut(s)	636, 1571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.