Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Reverse (-)

59149507 .. 59151197

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0467200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAACCACAGATACACTTGTCATTAAGGCTCCTAAGAAAACTCCACTAATATTGAGGATGGTGGTATTACTTTTTACAATGGCTTGTGGTGTTTATATTTGCTTAGTCTGCTTGAAGCAAATAAACCCTAACAAAACGATGATCAAGTTCTTAAACATCAAGGTGATTGACTACGACAACGAATCATGCCCTGATCCTCATCTTGAGCAATGGGAAATCCCCTATGTGCATTACCCAAAACCTCGCACATTTGAGAGGAATGAATGCGCCTGCAATCCGGTACGCTACTTTGCAATATTGTCAATGCAGAGATCAGGGAGTGGATGGTTTGAGACATTGTTGAATAATCACACTAATGTAAGTTCTAACGGAGAAATCTTTTCGATCCCGGATAGGAGACGTAATGGTTCTTCAATTTTGAAGAACATGGATAAAGTATACAATCTCGATTGGTTTAGTAGTGCTTCCAGAAATGAGTGTTCTGCAGCTGTTGGATTCAAATGGATGCTTAATCAGGGTTTGATGGAGAACCATGAAGAGATAGTGAAGTACTTCAAGAAAAGAGGCGTGTCTGCAATATTCCTCTTCCGAAGGAACTTACTCCGCAGAATGATTTCTGTACATGCAAATTCTTATGATAAAGAAGCTAAGCAACTCAATGGCACTCACAAGTCCCATGTGCATTTTCCATTGGAAGCTCAAATACTTGCAAAGTACAAACCCAAGCTTAATGCCACATTACTAATCCCAGAGCTGAAGCAAGACGAGGAGACAGCTGCGAAAGCTACACAGTATTTCAAGACCACTCGGCACATTGTTCTTTACTACGAGGACGTGATCAATAACCGCACTAAACTCAATGAAGTTCAAAAGTTCCTTGGGTTGCCTTATCGAGAGCTCAAGAGCCGTCAAGTTAAGATACATACAACACCGTTGTCGAACCAAATCGAGAACTGGGAAGATGTTCAGAAGACACTCAAAGGAACATCATACGAAAGCTTCCTCGCAGACTATCAAGTTTCTTCTTTAGCACTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

40.31

Weight (kDa)

9.24

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	2 cut(s)	607, 850
AclWI	GGATC	2 cut(s)	191, 382
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	4 cut(s)	285, 554, 624, 719
AgsI	TTSAA	8 cut(s)	118, 346, 417, 424, 502, 559, 802, 872
AjiI	CACGTC	1 cut(s)	838
AluBI	AGCT	9 cut(s)	491, 650, 701, 730, 757, 779, 788, 901, 1002
AluI	AGCT	9 cut(s)	491, 650, 701, 730, 757, 779, 788, 901, 1002
Alw21I	GWGCWC	1 cut(s)	903
Alw26I	GTCTC	3 cut(s)	329, 394, 767
AlwI	GGATC	2 cut(s)	191, 382
ApeKI	GCWGC	2 cut(s)	488, 779
ApoI	RAATTY	1 cut(s)	631
Asp700I	GAANNNNTTC	3 cut(s)	554, 616, 966
AspLEI	GCGC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	178
BaeI	ACNNNNGTAYC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	903
BarI	GAAGNNNNNNTAC	4 cut(s)	397, 429, 690, 722
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	903
BbvI	GCAGC	2 cut(s)	500, 766
BccI	CCATC	3 cut(s)	55, 321, 520
BceAI	ACGGC	1 cut(s)	894
BclI	TGATCA	2 cut(s)	144, 840
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	3 cut(s)	329, 394, 767
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	2 cut(s)	489, 780
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	2 cut(s)	490, 781
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	838
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	967
BmsI	GCATC	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	967
BpiI	GAAGAC	1 cut(s)	980
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	227, 887
BpuMI	CCSGG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	880
BsaWI	WCCGGW	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	962
Bse3DI	GCAATG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	880
BseGI	GGATG	3 cut(s)	66, 332, 513
BseJI	GATNNNNATC	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	962
BseRI	GAGGAG	1 cut(s)	785
BseXI	GCAGC	2 cut(s)	500, 766
BsiHKAI	GWGCWC	1 cut(s)	903
BsiSI	CCGG	2 cut(s)	281, 392
BslFI	GGGAC	1 cut(s)	661
BsmAI	GTCTC	3 cut(s)	329, 394, 767
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	5 cut(s)	144, 196, 314, 387, 840
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	2 cut(s)	607, 850
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	2 cut(s)	191, 382
BsrDI	GCAATG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	962
BssECI	CCNNGG	1 cut(s)	880
BssMI	GATC	5 cut(s)	144, 196, 314, 387, 840
BssNAI	GTATAC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	880
Bst1107I	GTATAC	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	795, 936
Bst6I	CTCTTC	2 cut(s)	534, 593
BstAUI	TGTACA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	3 cut(s)	36, 106, 651
BstF5I	GGATG	3 cut(s)	66, 332, 513
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	5 cut(s)	147, 199, 317, 390, 843
BstMAI	GTCTC	3 cut(s)	329, 394, 767
BstMBI	GATC	5 cut(s)	144, 196, 314, 387, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 785
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	500, 766
BstV2I	GAAGAC	1 cut(s)	980
BstZ17I	GTATAC	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	3 cut(s)	66, 332, 513
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	1 cut(s)	272
Csp6I	GTAC	4 cut(s)	284, 553, 623, 718
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	5 cut(s)	189, 430, 536, 626, 680
CviQI	GTAC	4 cut(s)	284, 553, 623, 718
DdeI	CTNAG	3 cut(s)	36, 106, 651
DpnI	GATC	5 cut(s)	146, 198, 316, 389, 842
DpnII	GATC	5 cut(s)	144, 196, 314, 387, 840
Eam1104I	CTCTTC	2 cut(s)	534, 593
EarI	CTCTTC	2 cut(s)	534, 593
Ecl136II	GAGCTC	1 cut(s)	901
Eco130I	CCWWGG	1 cut(s)	880
Eco24I	GRGCYC	1 cut(s)	903
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	880
EcoT38I	GRGCYC	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	880
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	5 cut(s)	192, 433, 539, 629, 683
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	5 cut(s)	188, 429, 535, 625, 679
FbaI	TGATCA	2 cut(s)	144, 840
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	489, 780
FokI	GGATG	3 cut(s)	73, 339, 520
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	2 cut(s)	489, 780
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	2 cut(s)	489, 780
HapII	CCGG	2 cut(s)	281, 392
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	5 cut(s)	192, 433, 539, 629, 683
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	2 cut(s)	728, 1000
HinfI	GANTC	2 cut(s)	185, 498
HpaII	CCGG	2 cut(s)	281, 392
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	593, 972
Hpy188III	TCNNGA	8 cut(s)	206, 449, 471, 559, 802, 896, 904, 952
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	1 cut(s)	588
HpyCH4III	ACNGT	2 cut(s)	795, 936
HpyCH4IV	ACGT	2 cut(s)	403, 837
HpyCH4V	TGCA	9 cut(s)	232, 276, 296, 310, 488, 578, 629, 685, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 785
HpyF3I	CTNAG	3 cut(s)	36, 106, 651
HpySE526I	ACGT	2 cut(s)	403, 837
Hsp92II	CATG	5 cut(s)	192, 433, 539, 629, 683
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	2 cut(s)	144, 840
Kzo9I	GATC	5 cut(s)	144, 196, 314, 387, 840
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	207, 286, 294, 303, 405, 484, 503, 765, 943
Lsp1109I	GCAGC	2 cut(s)	500, 766
LweI	GCATC	1 cut(s)	498
MaeII	ACGT	2 cut(s)	403, 837
MalI	GATC	5 cut(s)	146, 198, 316, 389, 842
MboI	GATC	5 cut(s)	144, 196, 314, 387, 840
MboII	GAAGA	7 cut(s)	405, 436, 551, 580, 974, 985, 1017
MhlI	GDGCHC	1 cut(s)	903
MluCI	AATT	2 cut(s)	417, 631
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	9 cut(s)	51, 210, 252, 255, 560, 596, 763, 826, 1016
MroXI	GAANNNNTTC	3 cut(s)	554, 616, 966
MseI	TTAA	5 cut(s)	27, 155, 513, 732, 918
MslI	CAYNNNNRTG	2 cut(s)	164, 357
MspA1I	CMGCKG	2 cut(s)	491, 779
MspI	CCGG	2 cut(s)	281, 392
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	111, 785
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	5 cut(s)	144, 196, 314, 387, 840
NlaIII	CATG	5 cut(s)	192, 433, 539, 629, 683
NlaIV	GGNNCC	1 cut(s)	33
NmeAIII	GCCGAG	1 cut(s)	790
NspI	RCATGY	1 cut(s)	629
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	3 cut(s)	554, 616, 966
PfeI	GAWTC	2 cut(s)	185, 498
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	490, 781
Psp124BI	GAGCTC	1 cut(s)	903
PspN4I	GGNNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	490
PvuII	CAGCTG	2 cut(s)	491, 779
RsaI	GTAC	4 cut(s)	285, 554, 624, 719
RsaNI	GTAC	4 cut(s)	284, 553, 623, 718
RseI	CAYNNNNRTG	2 cut(s)	164, 357
SacI	GAGCTC	1 cut(s)	903
SaqAI	TTAA	5 cut(s)	27, 155, 513, 732, 918
SatI	GCNGC	2 cut(s)	489, 780
Sau3AI	GATC	5 cut(s)	144, 196, 314, 387, 840
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	903
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	2 cut(s)	164, 357
SmlI	CTYRAG	2 cut(s)	206, 902
SmoI	CTYRAG	2 cut(s)	206, 902
Sse9I	AATT	2 cut(s)	417, 631
SsiI	CCGC	2 cut(s)	607, 850
SspI	AATATT	3 cut(s)	54, 300, 582
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	880
TaaI	ACNGT	2 cut(s)	795, 936
TaiI	ACGT	2 cut(s)	406, 840
TaqI	TCGA	5 cut(s)	386, 450, 895, 941, 951
TasI	AATT	2 cut(s)	417, 631
TatI	WGTACW	3 cut(s)	552, 622, 717
TfiI	GAWTC	2 cut(s)	185, 498
Tru1I	TTAA	5 cut(s)	27, 155, 513, 732, 918
Tru9I	TTAA	5 cut(s)	27, 155, 513, 732, 918
TseI	GCWGC	2 cut(s)	488, 779
TspDTI	ATGAA	3 cut(s)	279, 552, 879
TspGWI	ACGGA	1 cut(s)	387
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	3 cut(s)	554, 616, 966
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.