Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Forward (+)

3150114 .. 3150696

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1044500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTGATGAGGCTCAATATTGACTGCGATGCATGCTGCAGAAAAGTAAGAAGGATCCTCCTAAATATGAAAGTAATAGAGACACATTTGGTTGAGAAGCAGCAGTGCAAGGTGAGCGTGTGTGGGAGGTTTGTACCAGCAGATGTTGCCATAAAGTTGGGGAAAAAGATGAACCGAAGAGTTGAAGTTATGGAAATCCAAGAGTCAGATGGCAGCAACGAACAAATGGAGCAAAGGGCTATGATTACTACCAGTAGACCACACCAATTATATTGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.85

Weight (kDa)

9.04

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AclWI	GGATC	2 cut(s)	49, 62
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	49, 62
ApeKI	GCWGC	3 cut(s)	36, 100, 213
AsuHPI	GGTGA	2 cut(s)	16, 124
BamHI	GGATCC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	23, 112, 225
BccI	CCATC	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	37
BisI	GCNGC	3 cut(s)	37, 101, 214
BlsI	GCNGC	3 cut(s)	38, 102, 215
BmiI	GGNNCC	1 cut(s)	56
BmsI	GCATC	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	23, 112, 225
BsmAI	GTCTC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	56
BspMAI	CTGCAG	1 cut(s)	41
BspPI	GGATC	2 cut(s)	49, 62
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	172
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 114, 146
BstNSI	RCATGY	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	23, 112, 225
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	2 cut(s)	13, 239
CviKI_1	RGCY	2 cut(s)	13, 239
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	34
FaeI	CATG	1 cut(s)	36
FaiI	YATR	6 cut(s)	34, 68, 152, 191, 242, 271
FatI	CATG	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	37, 101, 214
Fsp4HI	GCNGC	3 cut(s)	37, 101, 214
FspBI	CTAG	1 cut(s)	280
GluI	GCNGC	3 cut(s)	37, 101, 214
Hin1II	CATG	1 cut(s)	36
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	2 cut(s)	16, 124
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	32, 39, 108
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 114, 146
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	2 cut(s)	150, 265
Lsp1109I	GCAGC	3 cut(s)	23, 112, 225
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	280
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	189
MflI	RGATCY	1 cut(s)	54
MluCI	AATT	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	3 cut(s)	3, 68, 120
Mph1103I	ATGCAT	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	33, 114, 146
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	56
NsiI	ATGCAT	1 cut(s)	34
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	38, 102, 215
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SatI	GCNGC	3 cut(s)	37, 101, 214
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	212
SetI	ASST	2 cut(s)	114, 131
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	37
SgeI	CNNG	6 cut(s)	45, 121, 130, 149, 212, 264
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	1 cut(s)	266
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	280
TasI	AATT	1 cut(s)	266
TscAI	CASTG	1 cut(s)	110
TseI	GCWGC	3 cut(s)	36, 100, 213
TspDTI	ATGAA	2 cut(s)	83, 185
TspRI	CASTG	1 cut(s)	110
XceI	RCATGY	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	1 cut(s)	280
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.