Rh4AG341000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002504
Physical Location & Seq
Forward (+)
65010141 .. 65011051
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG341000.1

Sequence Viewer

Length: 327 bp
ATGAAGTCGAATACCAGCTTAGCGCTTCCTGGACCCAGTCTCGCTTCTGTCGAATCCTTATCCATGCCTGTTTTCCAGGAAGTTGTTCTCGCGTCTGATATACGATGTACCGGATGTCAAAGGAGACTTGCTGACATGATCTCCAAATTGGGTGCAGATATTGAGTCTGTTGTGGTGAGCGCATCGGAGAAGAAGGTTACACTTGTATGTAGATATCCAAGTACTGCAGCAGCCAAGGTGCCAAGTCGGCTAGTTCCCGCGGTACACAGGAATCCTCTTAACAAATTTGCCTTGATTAAACGCATACTTCGTTCTTCCTCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

108

Amino Acids

11.52

Weight (kDa)

10.04

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccII CGCG 2 cut(s) 92, 260
AciI CCGC 2 cut(s) 258, 260
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 3 cut(s) 109, 223, 264
AfeI AGCGCT 1 cut(s) 24
AjnI CCWGG 2 cut(s) 28, 75
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 44, 118
Ama87I CYCGRG 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 227, 230
ApoI RAATTY 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 2 cut(s) 25, 182
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 239, 242
BciT130I CCWGG 2 cut(s) 30, 77
BcoDI GTCTC 2 cut(s) 44, 118
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 247
BisI GCNGC 2 cut(s) 228, 231
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 2 cut(s) 229, 232
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 30, 77
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 34, 240
BmrFI CCNGG 2 cut(s) 30, 77
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 234, 258, 318
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 30, 77
BseDI CCNNGG 3 cut(s) 234, 258, 318
BseGI GGATG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 239, 242
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 92, 260
BshNI GGYRCC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 44, 118
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 1 cut(s) 138
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 2 cut(s) 258, 260
BspFNI CGCG 2 cut(s) 92, 260
BspLI GGNNCC 2 cut(s) 34, 240
BspMAI CTGCAG 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 3 cut(s) 234, 258, 318
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 30, 77
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 119
BstFNI CGCG 2 cut(s) 92, 260
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 182
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 44, 118
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 2 cut(s) 30, 77
BstSCI CCNGG 2 cut(s) 28, 75
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 2 cut(s) 92, 260
BstV1I GCAGC 2 cut(s) 239, 242
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 119
CfoI GCGC 2 cut(s) 25, 182
Cfr13I GGNCC 1 cut(s) 32
Cfr42I CCGCGG 1 cut(s) 261
CseI GACGC 1 cut(s) 81
Csp6I GTAC 3 cut(s) 108, 222, 263
CviAII CATG 2 cut(s) 64, 136
CviJI RGCY 3 cut(s) 18, 233, 250
CviKI_1 RGCY 3 cut(s) 18, 233, 250
CviQI GTAC 3 cut(s) 108, 222, 263
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 234
Eco32I GATATC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 32
Eco47III AGCGCT 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 28, 75
EcoRV GATATC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 67, 139
FaiI YATR 5 cut(s) 65, 101, 137, 208, 305
FatI CATG 2 cut(s) 63, 135
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 228, 231
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 228, 231
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 24, 181
GluI GCNGC 2 cut(s) 228, 231
HaeII RGCGCY 1 cut(s) 26
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 81
HhaI GCGC 2 cut(s) 25, 182
Hin1II CATG 2 cut(s) 67, 139
Hin6I GCGC 2 cut(s) 23, 180
HinP1I GCGC 2 cut(s) 23, 180
HinfI GANTC 3 cut(s) 53, 164, 271
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 97, 187
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 155, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 19
Hsp92II CATG 2 cut(s) 67, 139
HspAI GCGC 2 cut(s) 23, 180
KspI CCGCGG 1 cut(s) 261
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 9 cut(s) 15, 28, 42, 49, 62, 81, 89, 124, 253
Lsp1109I GCAGC 2 cut(s) 239, 242
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 2 cut(s) 202, 306
MluCI AATT 2 cut(s) 146, 284
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 2 cut(s) 279, 297
MslI CAYNNNNRTG 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 30, 77
MvaI CCWGG 2 cut(s) 30, 77
MvnI CGCG 2 cut(s) 92, 260
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 1 cut(s) 138
NlaIII CATG 2 cut(s) 67, 139
NlaIV GGNNCC 2 cut(s) 34, 240
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 307
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 2 cut(s) 53, 271
PflFI GACNNNGTC 1 cut(s) 36
PfoI TCCNGGA 2 cut(s) 28, 75
PkrI GCNGC 2 cut(s) 229, 232
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 28, 75
PspGI CCWGG 2 cut(s) 28, 75
PspN4I GGNNCC 2 cut(s) 34, 240
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 36
RsaI GTAC 3 cut(s) 109, 223, 264
RsaNI GTAC 3 cut(s) 108, 222, 263
RseI CAYNNNNRTG 1 cut(s) 205
SacII CCGCGG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 279, 297
SatI GCNGC 2 cut(s) 228, 231
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 32
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 30, 77
SetI ASST 3 cut(s) 20, 198, 240
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 225
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 205
Sse9I AATT 2 cut(s) 146, 284
SsiI CCGC 2 cut(s) 258, 260
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 28, 75
StyI CCWWGG 1 cut(s) 234
TaqI TCGA 2 cut(s) 8, 51
TasI AATT 2 cut(s) 146, 284
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 2 cut(s) 53, 271
Tru1I TTAA 2 cut(s) 279, 297
Tru9I TTAA 2 cut(s) 279, 297
TseI GCWGC 2 cut(s) 227, 230
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.