Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Reverse (-)

20274563 .. 20275531

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGACAGACAAGTTCTGCTACATGTTGATGCGAATCCATATGGACTGCAATGGTTGTTACAGAAAAGTACGGAGAGTAATTCTCGATATGCGAGAGTTAGAGACTCATTTGATAGAGAAGAAGGAGTGCCGGGTGAGTGTATGCGGCAGATTTATCCCACGGGACGTGGCGATCAAGATAAGGAAGAAGACGAATCGCAGGGTTGAGATACTCGAAATACAAGAGCTTATGGACAACAGTAACACTGCCACCAACGATCAAGAAAACCTTCAAGATCAGGCGCCGCATACGCCTTTGATCAGTTCTTGGGATAATGTCATATCATACCCTAACCAAGTTGAAACTTTTTGCATAGGATCACATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

14.44

Weight (kDa)

8.25

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AciI	CCGC	2 cut(s)	144, 284
AclWI	GGATC	1 cut(s)	364
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	272, 341
AjiI	CACGTC	1 cut(s)	166
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	364
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	2 cut(s)	145, 284
BlsI	GCNGC	2 cut(s)	146, 285
Bme1390I	CCNGG	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpuMI	CCSGG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	55
Bse8I	GATNNNNATC	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	171, 256, 274, 297, 356
BspACI	CCGC	2 cut(s)	144, 284
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	5 cut(s)	171, 256, 274, 297, 356
BssNI	GRCGYC	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	5 cut(s)	174, 259, 277, 300, 359
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	5 cut(s)	171, 256, 274, 297, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
CfoI	GCGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	1 cut(s)	226
CviKI_1	RGCY	1 cut(s)	226
CviQI	GTAC	1 cut(s)	68
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	5 cut(s)	173, 258, 276, 299, 358
DpnII	GATC	5 cut(s)	171, 256, 274, 297, 356
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
FaeI	CATG	1 cut(s)	25
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	145, 284
Fsp4HI	GCNGC	2 cut(s)	145, 284
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	145, 284
HaeII	RGCGCY	1 cut(s)	284
HapII	CCGG	1 cut(s)	130
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	3 cut(s)	33, 103, 193
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	1 cut(s)	145
Hpy188III	TCNNGA	4 cut(s)	83, 175, 260, 272
HpyAV	CCTTC	2 cut(s)	115, 278
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	48, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	281
KasI	GGCGCC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	5 cut(s)	171, 256, 274, 297, 356
LpnPI	CCDG	3 cut(s)	143, 184, 263
LweI	GCATC	1 cut(s)	18
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	56, 239
MalI	GATC	5 cut(s)	173, 258, 276, 299, 358
MboI	GATC	5 cut(s)	171, 256, 274, 297, 356
MboII	GAAGA	3 cut(s)	130, 196, 199
MluCI	AATT	1 cut(s)	78
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	1 cut(s)	367
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	289
NarI	GGCGCC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	39
NdeII	GATC	5 cut(s)	171, 256, 274, 297, 356
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	25
PciI	ACATGT	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	33, 193
PkrI	GCNGC	2 cut(s)	146, 285
PleI	GAGTC	1 cut(s)	97
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	282
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	2 cut(s)	145, 284
Sau3AI	GATC	5 cut(s)	171, 256, 274, 297, 356
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	3 cut(s)	168, 228, 270
SfaNI	GCATC	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	2 cut(s)	144, 284
SspDI	GGCGCC	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	84, 213
TasI	AATT	1 cut(s)	78
TauI	GCSGC	2 cut(s)	147, 286
TfiI	GAWTC	2 cut(s)	33, 193
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TscAI	CASTG	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.