Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Forward (+)

63710639 .. 63712111

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTCCGATTTCTTGGGATAAGAAGAAGTTTGCTCGACTATTTCCTCACACGGCCGAGAAGTGGTGGCGACTTCCTAGAACCAGCTCAACGGTAGAAGTACCTGATCTCGGTGCTGATTTTGTTGCCAAAAATATTCTGCAGCAACCATATTACATCTCTCTCAAATCTGATCACAAGTTCATGACGGACAAGTTCTGCGGCATGCTCATGAGAATCAATATCGATTGCAATGGTTGTTACAGAAAAGTAAAGAGAGCCCTTCTTGATATGCGAGAACTGGAGACACATTTGATAGAGAAAAAGGAGTGCAGGGTGAGCGTGTATGGTAGATTCATCCCACAAGACGTAGCAATCAAGATTAGGAAGAAGACTAATCGCCGAGTTGAGATACTCGACATACAAGAACTTCAGGTCAGCAGTAACACCAATGACAATGAGCAAGATCAACATCAAGAGCAGCAGAGACCTTTGATCAGTTCTAATTGGAATCTCATATCCAACAGCTGCAATAACCAATTCGAAACTCGTATACACCACGAGAAACATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

21.91

Weight (kDa)

9.21

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	532
AciI	CCGC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	63, 110
AluBI	AGCT	2 cut(s)	87, 507
AluI	AGCT	2 cut(s)	87, 507
Alw26I	GTCTC	3 cut(s)	9, 278, 460
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	3 cut(s)	142, 460, 507
AsuHPI	GGTGA	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	154, 472, 494
BceAI	ACGGC	1 cut(s)	69
BclI	TGATCA	2 cut(s)	172, 474
BcoDI	GTCTC	3 cut(s)	9, 278, 460
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	4 cut(s)	143, 202, 461, 508
BlsI	GCNGC	4 cut(s)	144, 203, 462, 509
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	522
Bsa29I	ATCGAT	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 110
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	225
BseGI	GGATG	1 cut(s)	336
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	63, 110
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	285
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	154, 472, 494
BsgI	GTGCAG	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	63, 110
BsmAI	GTCTC	3 cut(s)	9, 278, 460
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	460
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	4 cut(s)	106, 172, 445, 474
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	225
BspHI	TCATGA	2 cut(s)	183, 210
BspMAI	CTGCAG	1 cut(s)	144
BspT104I	TTCGAA	1 cut(s)	522
BspTNI	GGTCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	4 cut(s)	106, 172, 445, 474
BssNAI	GTATAC	1 cut(s)	533
BssSI	CACGAG	1 cut(s)	539
Bst1107I	GTATAC	1 cut(s)	533
Bst2BI	CACGAG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	4 cut(s)	109, 175, 448, 477
BstMAI	GTCTC	3 cut(s)	9, 278, 460
BstMBI	GATC	4 cut(s)	106, 172, 445, 474
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	154, 472, 494
BstV2I	GAAGAC	1 cut(s)	377
BstZ17I	GTATAC	1 cut(s)	533
BstZI	CGGCCG	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	206
CciI	TCATGA	2 cut(s)	183, 210
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	3 cut(s)	184, 205, 211
CviJI	RGCY	4 cut(s)	56, 87, 260, 507
CviKI_1	RGCY	4 cut(s)	56, 87, 260, 507
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	4 cut(s)	108, 174, 447, 476
DpnII	GATC	4 cut(s)	106, 172, 445, 474
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	460
Eco52I	CGGCCG	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	3 cut(s)	187, 208, 214
FaiI	YATR	9 cut(s)	151, 185, 206, 212, 272, 327, 401, 497, 533
FatI	CATG	3 cut(s)	183, 204, 210
FbaI	TGATCA	2 cut(s)	172, 474
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	4 cut(s)	143, 202, 461, 508
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	4 cut(s)	143, 202, 461, 508
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	4 cut(s)	143, 202, 461, 508
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	187, 208, 214
HinfI	GANTC	3 cut(s)	216, 333, 490
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	2 cut(s)	9, 172
Hpy188III	TCNNGA	5 cut(s)	184, 211, 266, 358, 455
Hpy8I	GTNNAC	1 cut(s)	533
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	142, 231, 312, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	187, 208, 214
Ksp22I	TGATCA	2 cut(s)	172, 474
Kzo9I	GATC	4 cut(s)	106, 172, 445, 474
LpnPI	CCDG	5 cut(s)	97, 117, 266, 298, 398
Lsp1109I	GCAGC	3 cut(s)	154, 472, 494
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	239, 422
MalI	GATC	4 cut(s)	108, 174, 447, 476
MboI	GATC	4 cut(s)	106, 172, 445, 474
MboII	GAAGA	3 cut(s)	37, 379, 382
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	2 cut(s)	484, 518
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	553
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	318
NdeII	GATC	4 cut(s)	106, 172, 445, 474
NlaIII	CATG	3 cut(s)	187, 208, 214
NmeAIII	GCCGAG	2 cut(s)	82, 407
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	522
PaeI	GCATGC	1 cut(s)	208
PagI	TCATGA	2 cut(s)	183, 210
PfeI	GAWTC	3 cut(s)	216, 333, 490
PkrI	GCNGC	4 cut(s)	144, 203, 462, 509
PstI	CTGCAG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	507
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	553
SatI	GCNGC	4 cut(s)	143, 202, 461, 508
Sau3AI	GATC	4 cut(s)	106, 172, 445, 474
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	6 cut(s)	89, 106, 351, 417, 472, 509
SfcI	CTRYAG	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	209
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	2 cut(s)	484, 518
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	4 cut(s)	37, 225, 396, 522
TasI	AATT	2 cut(s)	484, 518
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	216, 333, 490
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TseI	GCWGC	3 cut(s)	142, 460, 507
TspDTI	ATGAA	2 cut(s)	172, 325
TspGWI	ACGGA	1 cut(s)	203
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	532
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.