Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Forward (+)

3053177 .. 3054638

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1043600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAGTCTCGGAGCTTTTCGCTTTCTCCCGCAACCAGTCTTGCCTCTGCTGAATCCTTGTCCATGCCTCTGCTGCAGGAAGTTGTTCTCTCAGCTGATGTAAGCTGTAGTGATTGCCAGAAGAGACTTTCTGACATTATGTCAAAAATGGGTGAGGTAGAATCGGTTGTGGTGAATGTGTCGGAGAAGAGGGTGACGCTCGTATGCAAATATCCCGGTGCGGCCAAAGTTCCATCCACTCGGCTAGTCCCTGCAGTATACAAAAAACCTCTAAACAAATTTTCGTTGATTCGAAGGATGCTTCGTTCTTCCTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

107

Amino Acids

11.54

Weight (kDa)

9.69

Isoelectric Point (pI)

75.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	2 cut(s)	30, 221
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	278
AhdI	GACNNNNNGTC	1 cut(s)	139
AloI	GAACNNNNNNTCC	2 cut(s)	289, 321
AluBI	AGCT	3 cut(s)	15, 95, 105
AluI	AGCT	3 cut(s)	15, 95, 105
Alw26I	GTCTC	2 cut(s)	12, 118
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	164, 184, 205
AsuII	TTCGAA	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	12, 118
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	3 cut(s)	74, 106, 252
BisI	GCNGC	2 cut(s)	74, 222
BlsI	GCNGC	2 cut(s)	75, 223
Bme1390I	CCNGG	1 cut(s)	216
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	233, 303
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	12, 118
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	292
BspACI	CCGC	2 cut(s)	30, 221
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	104
BspMAI	CTGCAG	2 cut(s)	78, 256
BspT104I	TTCGAA	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	36
BssNAI	GTATAC	1 cut(s)	259
Bst1107I	GTATAC	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	116, 182
BstBI	TTCGAA	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	233, 303
BstMAI	GTCTC	2 cut(s)	12, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	3 cut(s)	74, 106, 252
BstV1I	GCAGC	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	233, 303
CseI	GACGC	1 cut(s)	205
CviAII	CATG	2 cut(s)	64, 315
CviJI	RGCY	5 cut(s)	15, 95, 105, 224, 244
CviKI_1	RGCY	5 cut(s)	15, 95, 105, 224, 244
DdeI	CTNAG	1 cut(s)	91
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	116, 182
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	2 cut(s)	116, 182
FaeI	CATG	2 cut(s)	67, 318
FaiI	YATR	5 cut(s)	65, 140, 205, 259, 316
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	63, 314
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	74, 222
FokI	GGATG	2 cut(s)	220, 310
Fsp4HI	GCNGC	2 cut(s)	74, 222
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	2 cut(s)	74, 222
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	67, 318
HinfI	GANTC	3 cut(s)	53, 161, 289
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	164, 184, 205
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	12, 133, 184
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	76, 207, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	67, 318
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	49, 62, 131, 229, 264
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	193
MboII	GAAGA	3 cut(s)	133, 199, 300
MluCI	AATT	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	5 cut(s)	55, 78, 148, 183, 279
MroXI	GAANNNNTTC	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	216
NlaIII	CATG	2 cut(s)	67, 318
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	53, 161, 289
PkrI	GCNGC	2 cut(s)	75, 223
PstI	CTGCAG	2 cut(s)	78, 256
PvuII	CAGCTG	1 cut(s)	95
SatI	GCNGC	2 cut(s)	74, 222
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	5 cut(s)	17, 97, 107, 159, 271
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	3 cut(s)	74, 106, 252
SfuI	TTCGAA	1 cut(s)	292
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	2 cut(s)	30, 221
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	214
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	278
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	3 cut(s)	53, 161, 289
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.