RchiOBHm_Chr4g0435471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002504
Physical Location & Seq
Forward (+)
59013482 .. 59015661
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40390

Sequence Viewer

Length: 600 bp
ATGAAGTCGAATACCAGCTTAGCGCTTCCTGGACCCAGTCTCGCTTCTGTCGAATCCTTATCCATGCCTGTTTTCCAGGAAGTTGTTCTCGCGTCTGATATACGATGTACCGGATGTCAAAGGAGACTTGCTGACATGATCTCCAAATTGGGTGCAGATATTGAGTCTGTTGTGGTGAGCGCATCGGAGAAGAAGGTTACACTTGTATGTAGATATCCAAGTACTGCAGCAGCCAAGGTGCCAAGTCGGCTAGTTCCCGCGTCATCAGACCAACCAAAAATTGATCTCAGCTCTTTGGCAACTCCAACTTCATGGCAGGAAAGGCAATACTGTTGCATGGTGATGAGGCTCAATGTTGATTGCAATGGATGTGTTAGGAAAGTAAGGAGAATACTACTCAACATGAAAGCTATAGAGACACATCTGATTGAGAAGCAGCAATGCAGGGTTAGTGTATGTGGGAGATTTATACCAGCAGATGTGGCAATAAAGTTGAGAAAAAAGATGAACCGCAGAGTCGAAATTCTGGAAATCCAAGAGTTTGATGAAACTACTACTGAACAGACGGACCAAAGGCCTATGATTACTGCAGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.15

Weight (kDa)

9.02

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccII CGCG 2 cut(s) 92, 260
AciI CCGC 2 cut(s) 258, 511
AcsI RAATTY 1 cut(s) 522
AfaI GTAC 2 cut(s) 109, 223
AfeI AGCGCT 1 cut(s) 24
AjnI CCWGG 2 cut(s) 28, 75
AluBI AGCT 3 cut(s) 18, 291, 410
AluI AGCT 3 cut(s) 18, 291, 410
Alw26I GTCTC 3 cut(s) 44, 118, 410
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 4 cut(s) 227, 230, 436, 590
ApoI RAATTY 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 2 cut(s) 25, 182
AspS9I GGNCC 2 cut(s) 32, 568
AsuHPI GGTGA 2 cut(s) 187, 352
AvaII GGWCC 2 cut(s) 32, 568
BanI GGYRCC 1 cut(s) 238
BbvI GCAGC 3 cut(s) 239, 242, 448
BciT130I CCWGG 2 cut(s) 30, 77
BcoDI GTCTC 3 cut(s) 44, 118, 410
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 3 cut(s) 225, 411, 588
BfoI RGCGCY 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 247
BisI GCNGC 4 cut(s) 228, 231, 437, 591
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 4 cut(s) 229, 232, 438, 592
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 30, 77
Bme18I GGWCC 2 cut(s) 32, 568
BmgT120I GGNCC 2 cut(s) 32, 568
BmiI GGNNCC 2 cut(s) 34, 240
BmrFI CCNGG 2 cut(s) 30, 77
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 2 cut(s) 370, 446
BseBI CCWGG 2 cut(s) 30, 77
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 119, 374
BseMI GCAATG 2 cut(s) 370, 446
BseMII CTCAG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 239, 242, 448
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 92, 260
BshFI GGCC 1 cut(s) 577
BshNI GGYRCC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 111
BsmAI GTCTC 3 cut(s) 44, 118, 410
BsnI GGCC 1 cut(s) 577
Bsp143I GATC 2 cut(s) 138, 283
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 2 cut(s) 258, 511
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 2 cut(s) 92, 260
BspLI GGNNCC 2 cut(s) 34, 240
BspMAI CTGCAG 2 cut(s) 229, 592
BspT107I GGYRCC 1 cut(s) 238
BsrDI GCAATG 2 cut(s) 370, 446
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 138, 283
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 30, 77
Bst4CI ACNGT 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 19, 287
BstF5I GGATG 2 cut(s) 119, 374
BstFNI CGCG 2 cut(s) 92, 260
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 182
BstKTI GATC 2 cut(s) 141, 286
BstMAI GTCTC 3 cut(s) 44, 118, 410
BstMBI GATC 2 cut(s) 138, 283
BstMWI GCNNNNNNNGC 3 cut(s) 247, 322, 482
BstNI CCWGG 2 cut(s) 30, 77
BstSCI CCNGG 2 cut(s) 28, 75
BstSFI CTRYAG 3 cut(s) 225, 411, 588
BstUI CGCG 2 cut(s) 92, 260
BstV1I GCAGC 3 cut(s) 239, 242, 448
BstXI CCANNNNNNTGG 1 cut(s) 312
BsuRI GGCC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 119, 374
CfoI GCGC 2 cut(s) 25, 182
Cfr13I GGNCC 2 cut(s) 32, 568
CseI GACGC 2 cut(s) 81, 249
Csp6I GTAC 2 cut(s) 108, 222
CviAII CATG 5 cut(s) 64, 136, 312, 337, 403
CviJI RGCY 8 cut(s) 18, 233, 250, 291, 349, 410, 577, 593
CviKI_1 RGCY 8 cut(s) 18, 233, 250, 291, 349, 410, 577, 593
CviQI GTAC 2 cut(s) 108, 222
DdeI CTNAG 2 cut(s) 19, 287
DpnI GATC 2 cut(s) 140, 285
DpnII GATC 2 cut(s) 138, 283
Eco130I CCWWGG 1 cut(s) 234
Eco147I AGGCCT 1 cut(s) 577
Eco32I GATATC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 32, 568
Eco47III AGCGCT 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 28, 75
EcoRV GATATC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 5 cut(s) 67, 139, 315, 340, 406
FatI CATG 5 cut(s) 63, 135, 311, 336, 402
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 228, 231, 437, 591
FokI GGATG 2 cut(s) 126, 381
Fsp4HI GCNGC 4 cut(s) 228, 231, 437, 591
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 24, 181
GluI GCNGC 4 cut(s) 228, 231, 437, 591
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 577
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 81, 249
HhaI GCGC 2 cut(s) 25, 182
Hin1II CATG 5 cut(s) 67, 139, 315, 340, 406
Hin6I GCGC 2 cut(s) 23, 180
HinP1I GCGC 2 cut(s) 23, 180
HinfI GANTC 3 cut(s) 53, 164, 516
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 187, 352
Hpy188I TCNGA 4 cut(s) 97, 187, 268, 426
Hpy188III TCNNGA 1 cut(s) 527
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 6 cut(s) 155, 227, 336, 363, 444, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 322, 482
HpyF3I CTNAG 2 cut(s) 19, 287
Hsp92II CATG 5 cut(s) 67, 139, 315, 340, 406
HspAI GCGC 2 cut(s) 23, 180
Kzo9I GATC 2 cut(s) 138, 283
Lsp1109I GCAGC 3 cut(s) 239, 242, 448
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 140, 285
MboI GATC 2 cut(s) 138, 283
MboII GAAGA 1 cut(s) 202
MluCI AATT 3 cut(s) 146, 279, 522
MlyI GAGTC 2 cut(s) 173, 525
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 205, 341
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 30, 77
MvaI CCWGG 2 cut(s) 30, 77
MvnI CGCG 2 cut(s) 92, 260
MwoI GCNNNNNNNGC 3 cut(s) 247, 322, 482
NdeII GATC 2 cut(s) 138, 283
NlaIII CATG 5 cut(s) 67, 139, 315, 340, 406
NlaIV GGNNCC 2 cut(s) 34, 240
PceI AGGCCT 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 36
PfoI TCCNGGA 2 cut(s) 28, 75
PkrI GCNGC 4 cut(s) 229, 232, 438, 592
PleI GAGTC 2 cut(s) 172, 524
PpsI GAGTC 2 cut(s) 172, 524
Psp6I CCWGG 2 cut(s) 28, 75
PspGI CCWGG 2 cut(s) 28, 75
PspN4I GGNNCC 2 cut(s) 34, 240
PspPI GGNCC 2 cut(s) 32, 568
PstI CTGCAG 2 cut(s) 229, 592
PsyI GACNNNGTC 1 cut(s) 36
RsaI GTAC 2 cut(s) 109, 223
RsaNI GTAC 2 cut(s) 108, 222
RseI CAYNNNNRTG 2 cut(s) 205, 341
SatI GCNGC 4 cut(s) 228, 231, 437, 591
Sau3AI GATC 2 cut(s) 138, 283
Sau96I GGNCC 2 cut(s) 32, 568
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 2 cut(s) 173, 525
ScrFI CCNGG 2 cut(s) 30, 77
SetI ASST 5 cut(s) 20, 198, 240, 293, 412
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 3 cut(s) 225, 411, 588
SinI GGWCC 2 cut(s) 32, 568
SmiMI CAYNNNNRTG 2 cut(s) 205, 341
Sse9I AATT 3 cut(s) 146, 279, 522
SseBI AGGCCT 1 cut(s) 577
SsiI CCGC 2 cut(s) 258, 511
SspMI CTAG 1 cut(s) 251
StuI AGGCCT 1 cut(s) 577
StyD4I CCNGG 2 cut(s) 28, 75
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 3 cut(s) 8, 51, 519
TasI AATT 3 cut(s) 146, 279, 522
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 1 cut(s) 53
TseI GCWGC 4 cut(s) 227, 230, 436, 590
TspDTI ATGAA 5 cut(s) 17, 300, 419, 521, 561
TspGWI ACGGA 1 cut(s) 581
Tth111I GACNNNGTC 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 32, 568
XapI RAATTY 1 cut(s) 522
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.