Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Reverse (-)

34743045 .. 34743673

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1214900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAGACAAGTTCTGCTACATGCTGATGAGAATCCATATGGACTGCAATGGTTGTTACAGAAAAGTAAGGAGAGCAATTCTCGATATTCGAGAGTTGGAGACTCATTCCATAGAGAAGAAGGAGTGCAGGGTGAGCGTCTGCGGCAGATTTATACCGCAGGACGTAGCGATCAAGATAAGGAAGAAGACAAATCGCAGAGTTGAGATACTCGATATACAAGAGCTTATGAGCAGTAACACCAATGATCAAGATCACCTTCAAGATCAGACGCCACATACGCCTTTGATCATTTCTTGGAATAATGTCGTCTCGTACCCTAACCAAGTTGAAACTTTTTGTACAGAATCACACCACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

14.21

Weight (kDa)

7.68

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	144, 158
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	2 cut(s)	317, 343
AgsI	TTSAA	2 cut(s)	263, 332
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	95, 316
AsuHPI	GGTGA	2 cut(s)	145, 248
BbsI	GAAGAC	1 cut(s)	194
BclI	TGATCA	2 cut(s)	247, 288
BcoDI	GTCTC	2 cut(s)	95, 316
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BsaBI	GATNNNNATC	2 cut(s)	32, 252
BsaHI	GRCGYC	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	55
Bse8I	GATNNNNATC	2 cut(s)	32, 252
BseJI	GATNNNNATC	2 cut(s)	32, 252
BseMI	GCAATG	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	95, 316
BsmBI	CGTCTC	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	341
Bsp143I	GATC	5 cut(s)	171, 247, 253, 265, 288
BspACI	CCGC	2 cut(s)	144, 158
BsrDI	GCAATG	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	341
BssMI	GATC	5 cut(s)	171, 247, 253, 265, 288
BssNI	GRCGYC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	341
BstKTI	GATC	5 cut(s)	174, 250, 256, 268, 291
BstMAI	GTCTC	2 cut(s)	95, 316
BstMBI	GATC	5 cut(s)	171, 247, 253, 265, 288
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 144, 280
BstNSI	RCATGY	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	194
CseI	GACGC	2 cut(s)	127, 280
Csp6I	GTAC	2 cut(s)	316, 342
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	1 cut(s)	226
CviKI_1	RGCY	1 cut(s)	226
CviQI	GTAC	2 cut(s)	316, 342
DpnI	GATC	5 cut(s)	173, 249, 255, 267, 290
DpnII	GATC	5 cut(s)	171, 247, 253, 265, 288
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	1 cut(s)	25
FaiI	YATR	8 cut(s)	23, 39, 41, 113, 155, 218, 230, 279
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	39
FbaI	TGATCA	2 cut(s)	247, 288
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	145
HgaI	GACGC	2 cut(s)	127, 280
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	1 cut(s)	25
HinfI	GANTC	3 cut(s)	33, 103, 347
HphI	GGTGA	2 cut(s)	145, 248
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	5 cut(s)	83, 92, 175, 251, 263
HpyAV	CCTTC	2 cut(s)	115, 269
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	48, 129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 144, 280
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	25
Ksp22I	TGATCA	2 cut(s)	247, 288
Kzo9I	GATC	5 cut(s)	171, 247, 253, 265, 288
LpnPI	CCDG	2 cut(s)	115, 146
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	56, 236
MalI	GATC	5 cut(s)	173, 249, 255, 267, 290
MboI	GATC	5 cut(s)	171, 247, 253, 265, 288
MboII	GAAGA	3 cut(s)	130, 196, 199
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	78
MseI	TTAA	1 cut(s)	361
MslI	CAYNNNNRTG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	135, 144, 280
NdeI	CATATG	1 cut(s)	39
NdeII	GATC	5 cut(s)	171, 247, 253, 265, 288
NlaIII	CATG	1 cut(s)	25
NspI	RCATGY	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	33, 347
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
RsaI	GTAC	2 cut(s)	317, 343
RsaNI	GTAC	2 cut(s)	316, 342
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	5 cut(s)	171, 247, 253, 265, 288
SchI	GAGTC	1 cut(s)	97
SetI	ASST	3 cut(s)	168, 228, 261
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	2 cut(s)	144, 158
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	84, 91, 213
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	341
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	33, 347
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.