Prupe.1G308900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
30059125 .. 30059604
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G308900.1

Sequence Viewer

Length: 201 bp
ATGGAAATGCATGTTCTCTGTGGACCCGTGGTGGAGATAGAGTCTGTTGTGGTGAATGCATTGGAGAAGAAGGTTACACTCATTTGCAGATATCCCAGAGTAGCCAAAGTACCGGCCCGTCCGCTAGTTGCTGCTGTTTACAGGAACCCTCTAAACAAATTTGCCTTGATTAAACGGATATTTCGTTCTTCCTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.41

Weight (kDa)

10.14

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 111
AloI GAACNNNNNNTCC 2 cut(s) 169, 201
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 23, 115
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 118
BfaI CTAG 1 cut(s) 125
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 115
BmiI GGNNCC 2 cut(s) 25, 146
BpuEI CTTGAG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse118I RCCGGY 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 113
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 1 cut(s) 116
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 25, 146
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 23, 115
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 11
CviJI RGCY 2 cut(s) 104, 116
CviKI_1 RGCY 2 cut(s) 104, 116
CviQI GTAC 1 cut(s) 110
Eco32I GATATC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 23
EcoRV GATATC 1 cut(s) 92
EcoT22I ATGCAT 2 cut(s) 12, 61
FaeI CATG 1 cut(s) 14
FaiI YATR 1 cut(s) 12
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 125
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 113
Hin1II CATG 1 cut(s) 14
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 23, 139
Hpy8I GTNNAC 2 cut(s) 23, 139
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 10, 59, 87
Hsp92II CATG 1 cut(s) 14
LpnPI CCDG 3 cut(s) 109, 126, 127
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 73
MboII GAAGA 2 cut(s) 79, 180
MluCI AATT 1 cut(s) 158
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 1 cut(s) 159
Mph1103I ATGCAT 2 cut(s) 12, 61
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 2 cut(s) 25, 146
NsiI ATGCAT 2 cut(s) 12, 61
NspI RCATGY 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PctI GAATGC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 25, 146
PspPI GGNCC 2 cut(s) 23, 115
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 23, 115
SchI GAGTC 1 cut(s) 50
SetI ASST 1 cut(s) 75
SgeI CNNG 9 cut(s) 23, 38, 40, 108, 125, 129, 137, 154, 178
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 158
SsiI CCGC 1 cut(s) 122
SspMI CTAG 1 cut(s) 125
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 14
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 2 cut(s) 12, 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.