Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002504

Physical Location & Seq

Genomic Coordinates Reverse (-)

17171715 .. 17173667

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCTCCGCCTCTTTGGGTTAAGAAGAAGTTTGCTCCACTAAAAACTCACAAGGGCAGTAATAGGTGGCTACTTCCTCGAACCAGCTCTGCTTCTGCTACAACCTTAGAGGTGCCTCTGTTCTGCTACATGCTGATGAGAATCAATATTGACTGCAATGGTTGCTACAGAAAAGTAAGGAGAGCTCTTCTTGATATGCGAGAGTTGGAGACACATTTGATAGAGAAGAAGGAGTGCAGGGTGAGCGTGTTTGGCAGATTTATCCCACAGGACGTAGCGATCAAGATAAGGAAGAAGACAAATCGCAGAGTTGAGATACTGGACATACAAGAACTTATCAGCAACAATAGTAACACCAATGATGAAGAAAACCAAGATCAGCAGCAGACGCCCTTGATCACTTCTTGGAATAATCCCATATCATACCCCAACCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

17.06

Weight (kDa)

9.57

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68585 AT3G25855
fragaria_vesca	FvH4_4g27620 FvH4_4g27620 FvH4_5g12320 FvH4_5g12320
malus_domestica	MD06G1214900.v1.1 MD13G1043600.v1.1 MD13G1043700.v1.1 MD14G1225800.v1.1 MD16G1044500.v1.1
prunus_persica	Prupe.1G308800_v2.0.a1 Prupe.1G308900_v2.0.a1 Prupe.5G220300_v2.0.a1
pyrus_communis	pycom06g19150 pycom14g18700 pycom16g03860 pycom16g03870
rosa_chinensis	RchiOBHm_Chr4g0435471 RchiOBHm_Chr7g0185241
rosa_laevigata	RLG00000004928 RLG00000006590
rosa_multiflora	Rmu_sc0000213.1_g000006 Rmu_sc0001940.1_g000026 Rmu_sc0030099.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376700
rosa_rugosa	Rorug04G0285300 Rorug06G0467100 Rorug06G0467100 Rorug06G0467200
rosa_samantha	Rh4AG341000 Rh4CG363800 Rh4CG363900 Rh4DG343500 Rh7AG075700 Rh7BG071700 Rh7CG072900 Rh7DG072300
rosa_wichuraiana	Rw4G029740 Rw4G029750 Rw7G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	389
AluBI	AGCT	2 cut(s)	87, 185
AluI	AGCT	2 cut(s)	87, 185
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	9, 203
ApeKI	GCWGC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	9, 203
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	9, 203
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	279, 376, 396
BspACI	CCGC	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	279, 376, 396
BssNI	GRCGYC	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	106
BstKTI	GATC	3 cut(s)	282, 379, 399
BstMAI	GTCTC	2 cut(s)	9, 203
BstMBI	GATC	3 cut(s)	279, 376, 396
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 243, 252, 388
BstNSI	RCATGY	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	302
CseI	GACGC	1 cut(s)	397
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	3 cut(s)	70, 87, 185
CviKI_1	RGCY	3 cut(s)	70, 87, 185
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	3 cut(s)	281, 378, 398
DpnII	GATC	3 cut(s)	279, 376, 396
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	1 cut(s)	133
FaiI	YATR	5 cut(s)	131, 197, 326, 419, 424
FatI	CATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	383
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	383
GluI	GCNGC	1 cut(s)	383
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	1 cut(s)	141
HphI	GGTGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	191, 283
HpyAV	CCTTC	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	156, 237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 243, 252, 388
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	279, 376, 396
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	97, 223, 254, 305
Lsp1109I	GCAGC	1 cut(s)	394
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	3 cut(s)	281, 378, 398
MboI	GATC	3 cut(s)	279, 376, 396
MboII	GAAGA	6 cut(s)	37, 179, 238, 304, 307, 377
MhlI	GDGCHC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	21, 87, 103, 126
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	134
MwoI	GCNNNNNNNGC	4 cut(s)	162, 243, 252, 388
NdeII	GATC	3 cut(s)	279, 376, 396
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	114
NspI	RCATGY	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	3 cut(s)	279, 376, 396
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	6 cut(s)	68, 89, 107, 114, 187, 276
SfcI	CTRYAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	134
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	148
SstI	GAGCTC	1 cut(s)	187
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	378
XceI	RCATGY	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.