Rh7CG072900

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002504
Physical Location & Seq
Reverse (-)
5216966 .. 5217529
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG072900.1

Sequence Viewer

Length: 372 bp
ATGACGGACAAGTTCTGCTGCATGCTCATGAGAATCAATATCGATTGCAATGGTTGTTACAGAAAAGTAAAGAGAGCCCTTCTTGATATGCGAGAACTGGAGACACATTTGATAGAGAAAAAGGAGTGCAGGGTGAGCGTGTATGGTAGATTCATCCCACAAGACGTAGCAATCAAGATTAGGAAGAAGACTAATCGCCGAGTTGAGATACTCGACATACAAGAACTTCAGGTCGGCAGTAACACCAATGACAATGAGCAAGATCAACATCAAGAGCAGCAGAGACCTCTGATCAGTTCTAATTGGAATCTCATATCCAACAGCTGCAATAACCAATTCGAAACTCGTATACACAACGAGAAACATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.71

Weight (kDa)

8.56

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 212
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 95, 277
ApeKI GCWGC 3 cut(s) 18, 277, 324
AsuHPI GGTGA 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 339
BanII GRGCYC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 3 cut(s) 5, 289, 311
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 95, 277
BisI GCNGC 3 cut(s) 19, 278, 325
BlsI GCNGC 3 cut(s) 20, 279, 326
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 339
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 267
BseCI ATCGAT 1 cut(s) 42
BseGI GGATG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 267
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 5, 289, 311
BsgI GTGCAG 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 42
BsmAI GTCTC 2 cut(s) 95, 277
Bso31I GGTCTC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 262, 291
BspDI ATCGAT 1 cut(s) 42
BspHI TCATGA 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 339
BspTNI GGTCTC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 1 cut(s) 102
BssMI GATC 2 cut(s) 262, 291
BssNAI GTATAC 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 23
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 2 cut(s) 265, 294
BstMAI GTCTC 2 cut(s) 95, 277
BstMBI GATC 2 cut(s) 262, 291
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 5, 289, 311
BstV2I GAAGAC 1 cut(s) 194
BstZ17I GTATAC 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 23
CciI TCATGA 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 42
CviAII CATG 2 cut(s) 22, 28
CviJI RGCY 2 cut(s) 77, 324
CviKI_1 RGCY 2 cut(s) 77, 324
DpnI GATC 2 cut(s) 264, 293
DpnII GATC 2 cut(s) 262, 291
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 79
FaeI CATG 2 cut(s) 25, 31
FaiI YATR 7 cut(s) 23, 29, 89, 144, 218, 314, 350
FatI CATG 2 cut(s) 21, 27
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 19, 278, 325
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 3 cut(s) 19, 278, 325
GluI GCNGC 3 cut(s) 19, 278, 325
GsuI CTGGAG 1 cut(s) 119
Hin1II CATG 2 cut(s) 25, 31
HinfI GANTC 3 cut(s) 33, 150, 307
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 4 cut(s) 28, 83, 175, 272
Hpy8I GTNNAC 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 21, 48, 129, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 25, 31
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 2 cut(s) 262, 291
LpnPI CCDG 3 cut(s) 83, 115, 215
Lsp1109I GCAGC 3 cut(s) 5, 289, 311
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 56, 239
MalI GATC 2 cut(s) 264, 293
MboI GATC 2 cut(s) 262, 291
MboII GAAGA 2 cut(s) 196, 199
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 301, 335
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 1 cut(s) 297
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 2 cut(s) 262, 291
NlaIII CATG 2 cut(s) 25, 31
NmeAIII GCCGAG 1 cut(s) 224
NspI RCATGY 1 cut(s) 25
NspV TTCGAA 1 cut(s) 339
PaeI GCATGC 1 cut(s) 25
PagI TCATGA 1 cut(s) 27
PfeI GAWTC 3 cut(s) 33, 150, 307
PkrI GCNGC 3 cut(s) 20, 279, 326
PvuII CAGCTG 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 3 cut(s) 19, 278, 325
Sau3AI GATC 2 cut(s) 262, 291
SduI GDGCHC 1 cut(s) 79
SetI ASST 4 cut(s) 168, 234, 289, 326
SfuI TTCGAA 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 26
SphI GCATGC 1 cut(s) 25
Sse9I AATT 2 cut(s) 301, 335
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 42, 213, 339
TasI AATT 2 cut(s) 301, 335
TfiI GAWTC 3 cut(s) 33, 150, 307
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TseI GCWGC 3 cut(s) 18, 277, 324
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 20
XceI RCATGY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.